Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38660 468 / 3e-166 Amino acid dehydrogenase family protein (.1.2.3.4) AT4G00620 410 / 4e-143 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT3G12290 363 / 2e-125 Amino acid dehydrogenase family protein (.1) AT4G00600 327 / 3e-111 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034187 [exp] 734 / 0 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10006425 [exp] 409 / 6e-143 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10011368 [exp] 409 / 7e-143 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 405 / 6e-142 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 402 / 7e-141 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10022670 [exp] 402 / 1e-136 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 341 / 2e-112 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114100 [exp] 479 / 3e-170 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.002G157100 [exp] 406 / 2e-141 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.011G098600 [exp] 358 / 1e-123 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.014G080701 [exp] 73 / 2e-16 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043398 pacid=23168327 polypeptide=Lus10043398 locus=Lus10043398.g ID=Lus10043398.BGIv1.0 annot-version=v1.0 ATGATTGTGACGACAATGCTGCTTAGGAGGATAAAGGGAGAAAAGATAGCAACTTGGGGAGGCACTCCGCTCAAGGGTTTAATGGCGGCAACTAAAAGAG GTTTAAGCACGCAAGTTCTCAAGTCTCCTTTGTATCTGACCTCTCTTGACATGCCTGATATTTGGGCTCCCAAATCCATGGATTGTGCTCCTTCTACGTC CCCTAACTACTCTTGTGAGCAGGATGCTGCTGCTGTTATTGACGGAAAATCAATTGCAGAGGAAATTAGGTCGACAATAGCTAGTGAAGTGTCCAGGATG AGAAGATGCATTGGAAAGGTCCCTGGTTTGGCTGTTATTTTGGTAGGTCAGAGATTGGATTCTCTGACTTATGTTCGCAATAAGATAAAAGCTTGTGAAG AAGCTGGAATCAAGTCCCTATTGGTTCAACTTCCTGAGGATTGCACAGAAGATACAATTCTCAGAGAATTGTCTCGTGTTAACAATGACTCTACAATTCA TGGTGTTCTTATCCAGCTTCCTCTACCAAAACATTTGAATGAAGAGAAGATCTTAAATTTGGTGAATTTAGAGAAAGATGTAGATGGCTTTCATCCGGTG CATATCGGGAATCTTGCGATGAGGGGAAGGGAACCTTTGTTCATCTCATGCACTCCGAAAGGTTGCATTGAATTGTTGATCAGGTCAGGCGTGCAAATCA TGGGAAAGCATGCTGTAGTGATTGGAAGAAGTAACATTGTCGGTTTACCTACATCACTTTTGTTGCAGAGGCACCATGCAACTGTCAGCATCGTCCATGC ATTATCAGAAAGTCCAGAGGTGACCACCAGGAAAGGTGACATTATCGTTGCAGCTGCTGGAGTGCCGAATCTAGTACGGGGAGACTGGTTAAAGCCGGGT GCAGTGGTCATTGATGTGGGAACATGCCCAGTTGAGGATCCAACTAGCGAATTTGGTTACCGTCTGGTGGGAGATGTGTGTTATGAGGAAGCAGCCAGGA TAGCATCGGCCATAACCCCAGTTCCTGGAGGAGTTGGACCCATGACGATTGCTATGCTTTTAGCTAACACTCTTGATGCTGCCAAGCGCGTTTGTGATTT TACTTGA
AA sequence Show only first row Show all	>Lus10043398 pacid=23168327 polypeptide=Lus10043398 locus=Lus10043398.g ID=Lus10043398.BGIv1.0 annot-version=v1.0 MIVTTMLLRRIKGEKIATWGGTPLKGLMAATKRGLSTQVLKSPLYLTSLDMPDIWAPKSMDCAPSTSPNYSCEQDAAAVIDGKSIAEEIRSTIASEVSRM RRCIGKVPGLAVILVGQRLDSLTYVRNKIKACEEAGIKSLLVQLPEDCTEDTILRELSRVNNDSTIHGVLIQLPLPKHLNEEKILNLVNLEKDVDGFHPV HIGNLAMRGREPLFISCTPKGCIELLIRSGVQIMGKHAVVIGRSNIVGLPTSLLLQRHHATVSIVHALSESPEVTTRKGDIIVAAAGVPNLVRGDWLKPG AVVIDVGTCPVEDPTSEFGYRLVGDVCYEEAARIASAITPVPGGVGPMTIAMLLANTLDAAKRVCDFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	0	1
AT3G25680			unknown protein		Lus10021714 [exp]	2.2	0.8204
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	3.2	0.7980
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10035662 [exp]	8.5	0.7332
					Lus10023643 [exp]	9.4	0.7794
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	12.4	0.7830
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	13.7	0.7519
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	16.1	0.7782
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	18.9	0.7737
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	19.6	0.7725
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	21.3	0.7585

Compare expression of checked genes

Lus10043398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.