Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 348 / 1e-118 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034186 [exp] 554 / 0 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10017007 [exp] 362 / 5e-124 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10021331 [exp] 296 / 2e-97 AT1G08370 305 / 1e-100 decapping 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160200 [exp] 434 / 3e-152 AT1G08370 377 / 7e-130 decapping 1 (.1) Potri.006G208600 [exp] 365 / 4e-125 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.016G075200 [exp] 310 / 1e-103 AT1G08370 294 / 1e-97 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06058 [flax] [poplar] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Lus10043399 pacid=23168251 polypeptide=Lus10043399 locus=Lus10043399.g ID=Lus10043399.BGIv1.0 annot-version=v1.0 ATGTCGCAGAACGGGAAATTAATGCCGAATCTGGACCAGCAGAGCACCAAACTCCTTAATCTAACAGTTCTCCAGCGAATCGACCCTTTCGTTGAAGAAA TCCTTATCACCGCTGCCCACGTCACTCTCTACGAGTTCAACGTCGACCTCACCCAATGGAGCCGCAAGGATGTCGAAGGATCTCTGTTCGTTGTCAAGAG AAATGCGCAGCCTCGGTTTCAGTTCATTGTGATGAATCGACGCAGTACAGATAACTTGGTGGAAGATCTACTGGGAGATTTTGAGTTTGAGCTTCAGCTT CCATATCTTTTGTATCGAAATGCTGCCCAGGAAGTGAATGGGATTTGGTTTTACAATGCCCGAGAATGTGAAGACGTTGCCAATTTGTTCACCAGGATAT TAAATGCATATGCCAAGGTGCCTCCAAAGTCAAAGGTGTCATCAACTAAGAGTGAGTTTGAAGAACTCGAAGCTGTTCCAACCATGGCAGTTATGGATGG TCCTTTGGAGCCTTCTTCTGTAGCAGTCTCGGGTGTTTCGGATGTGCCTGATGATCATGCCTTCATCAACTTCTTTAGTACTATGAGCATTGGGACTGCT GCGACGAATGTAGAGACTCCTGGACAAGCTTATCAGTCTCCAAGTCCAGTCTCTATACCTTCACACCCTTCATCAGCTGCTTCAAGTCCAATGCCAAACA TGCAGACATCATTTCCTCTGCTGGCATCGAGTCCTTTAATTCCACTACTCGATGCCCCTGATGTTGCTGGAAACAACAAGAGGACAACTAATCTTGTGAA CCCTTCACTCTTCATTGTCCCCCGTCCATCCTCATCTTCAGTACAGACAATTATGCCTGCTGTTTCATCCGTTCCTACTGCTTCTCCACTGAATCCTACA GCTGGTCTACAACGTCCTTATGGTGCACCATTGCTTCAACCTTTTCCACCACCTACACCACCTCCATCCCTAACTCCTGTTTCTGTTCCTGCTGCAAATT ATGGGCCAGTAATAAGCAGAGAGAAGGTCCGGGATGCCCTTTTGGTCCTTGTCCAGGACAATCAATTCATCGACATGGTGTATCGGGCATTGCTGAATGC ACACAATTCTTAG
AA sequence Show only first row Show all	>Lus10043399 pacid=23168251 polypeptide=Lus10043399 locus=Lus10043399.g ID=Lus10043399.BGIv1.0 annot-version=v1.0 MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTLYEFNVDLTQWSRKDVEGSLFVVKRNAQPRFQFIVMNRRSTDNLVEDLLGDFEFELQL PYLLYRNAAQEVNGIWFYNARECEDVANLFTRILNAYAKVPPKSKVSSTKSEFEELEAVPTMAVMDGPLEPSSVAVSGVSDVPDDHAFINFFSTMSIGTA ATNVETPGQAYQSPSPVSIPSHPSSAASSPMPNMQTSFPLLASSPLIPLLDAPDVAGNNKRTTNLVNPSLFIVPRPSSSSVQTIMPAVSSVPTASPLNPT AGLQRPYGAPLLQPFPPPTPPPSLTPVSVPAANYGPVISREKVRDALLVLVQDNQFIDMVYRALLNAHNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10043399 [exp]	0	1
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10038539 [exp]	14.2	0.6869
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10037000 [exp]	44.4	0.6525
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	63.0	0.6549
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	65.4	0.6457
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	67.2	0.6353
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	69.6	0.6562
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	112.8	0.5775
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	125.5	0.5889
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	209.9	0.5655
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	241.8	0.5611

Compare expression of checked genes

Lus10043399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.