Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22340 340 / 9e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034185 [exp] 522 / 0 AT5G22340 331 / 2e-112 unknown protein Lus10029836 [exp] 50 / 1e-06 AT2G31040 480 / 2e-171 ATP synthase protein I -related (.1) Lus10020702 [exp] 49 / 2e-06 AT2G31040 462 / 3e-164 ATP synthase protein I -related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160500 [exp] 380 / 5e-133 AT5G22340 349 / 2e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043400 pacid=23168332 polypeptide=Lus10043400 locus=Lus10043400.g ID=Lus10043400.BGIv1.0 annot-version=v1.0 ATGGACGCTATCGCCGTCTCAGGCATTGCCTGTTTCTGCAGCAGCTACCCCAAATCTCTTCTTCCCAATTCTTTATATCCACTTCCTTATCCATCGAAGC CACTTCTCAAGGCCAACCCACGAGCTGCTTCACTTTTAAAAGCGAGTACTAACCCAGTCAGTGAACTTGCGGATGAAGATGTTCTGCAGATGTTTCTCGA GGAAAGAGCAGAAAGCGGAGACTTCGTGTCTAAAATTTGTGACATGTTCTGGCAGGGAGATCTCATAAAACTCGTTGATGCTGATATCGGTAAACCCGTC GAAACTCCTGCCCAGGAAGTGGAGGAGGTTACTGAAGATGATCAGGAAGATGGGTTTTTGAAACTTGCCAGAACCCAACAATGGGTATTAGGAGCTAGTG ATGCCCCAAAGAACAAAAAAGCCATTGCTAAGGCCCTCCAGGATGACAGAGAAAGAAGAAAGAAACTGAGCTTTCTGAAATACGAAGCTCTCAAAAGGGA ATTGATGTTTCTATCAATTGGTATTGGCACAGCAGGTTGCGGATACTGTTTGGTAGCCTTATCACTTCAGGCTGCTATAAGTTATGCAGTTGGAGTGCTT TTCAGTTGCCTATACCTTCAGCTCTTGTATCAACATTCAGACAACCTCTCGAGGAAAATGGTCCCTTCAATTTTCACACAGAAGAAAGCCAAGAAAATTG GGATAAGAAGTGAGGATCTTAGAGATTCATTCGAGAAAACAATAAAGGGAAGCGGTATTGCCCTGTCGTCTCCTCGGCTTGTGATACCGGCAACTGTTTA CGGGCTATGGGCGCTATGCCATCACTATATCGGCAATGAGTTTTTCGATTTCCAGATTGTACCAGCCATGTTCGGGATGTTTGTGTACAAAGCTGCAGCT CTGGTACAAGTGTACAGAGATAATGAGGACCTTGAGCTCGTCTTCCCGGAGATGTAG
AA sequence Show only first row Show all	>Lus10043400 pacid=23168332 polypeptide=Lus10043400 locus=Lus10043400.g ID=Lus10043400.BGIv1.0 annot-version=v1.0 MDAIAVSGIACFCSSYPKSLLPNSLYPLPYPSKPLLKANPRAASLLKASTNPVSELADEDVLQMFLEERAESGDFVSKICDMFWQGDLIKLVDADIGKPV ETPAQEVEEVTEDDQEDGFLKLARTQQWVLGASDAPKNKKAIAKALQDDRERRKKLSFLKYEALKRELMFLSIGIGTAGCGYCLVALSLQAAISYAVGVL FSCLYLQLLYQHSDNLSRKMVPSIFTQKKAKKIGIRSEDLRDSFEKTIKGSGIALSSPRLVIPATVYGLWALCHHYIGNEFFDFQIVPAMFGMFVYKAAA LVQVYRDNEDLELVFPEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22340			unknown protein		Lus10043400 [exp]	0	1
AT4G02725			unknown protein		Lus10014675 [exp]	1.0	0.9790
AT5G22340			unknown protein		Lus10034185 [exp]	2.0	0.9718
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	2.6	0.9673
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	4.6	0.9738
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	4.9	0.9769
AT2G26340			unknown protein		Lus10000477 [exp]	6.3	0.9668
AT4G02725			unknown protein		Lus10006915 [exp]	6.7	0.9665
AT1G67700			unknown protein		Lus10011383 [exp]	7.3	0.9688
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	8.4	0.9663
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	8.9	0.9691

Compare expression of checked genes

Lus10043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.