Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41350 378 / 1e-132 AtAUG1, EMB2819 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein AT2G21980 42 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034184 [exp] 563 / 0 AT2G41350 396 / 2e-137 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046200 [exp] 424 / 1e-150 AT2G41350 483 / 5e-174 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043401 pacid=23168409 polypeptide=Lus10043401 locus=Lus10043401.g ID=Lus10043401.BGIv1.0 annot-version=v1.0 ATGAGCGACGTGATTTCCCTGAGCGATTCTCCAGGGTCCGAGTCCAAGAGCAGCATTGACGCATCTAGGATTGGGGAAGTTAAGGCTTGGCTCACATCTC AGTTTGACGCAATCGGCAAAGACGTCCCCGAGTTTGAATACACTCCTCGCACCATTGCCCATTTCCACGATTTAGCCTCTGTATCTCAGGCTAACACCAA GGCTGCAAATATTGTCGCCGCTGATTTCCGCCAGAAGGCCGCCGAGTACCGTGCTCAAGCTGCAAGGATTAGAGAGATAGTAGAGTATGTGGGACTTGCA CAAGAGAGTTTGCCTTCAAATGTGGTAGCTTCTGCTCAAGTTCTTGCAAACGTAGCAAATTTGTTGAATATTAGAGACACTGAACTCAGCAGTTTTCTTG TGGCAGCTGCGGACATTTCCTTGAGAAAGACCAGTGTGGAAGAAAAGAGGGCTAAAGCACGTAATGATTCCAAAGTTCTGCTGGAGTACACTCGGAAAGC AATAGCAAGGCTTACCTATTTGAAAAGAACACTTGCACAGCTTGAGGATGATGTAGCCCCTTGTGAAGCTCAAATGGACAACTGGAAGAACAATTTGGCA GTTATGGCGTCAAAAGAGCGACAATATTTTCAACAGCTTTCCAACTGCAAGGCTCGGCTTAACCGTGTGAGCTATACACCAGAGATAAACCATAGCGTGC TGGTTGAACTAGGAGAGCACAAAAAGCATCTGGAAAGGGAAACCAAACCCATCTTGACTACATTGAAGAGTTACCAGGACTTGCCCGCGGATAAAGCTTT GGCAGCATTGGCAATCGAGGAAAAGAAAAGAAAGTATGCTACCCTTGAGAAGCATCTTGGAGACTTGCTGCAGGACCTGGCCATGCAATCATGA
AA sequence Show only first row Show all	>Lus10043401 pacid=23168409 polypeptide=Lus10043401 locus=Lus10043401.g ID=Lus10043401.BGIv1.0 annot-version=v1.0 MSDVISLSDSPGSESKSSIDASRIGEVKAWLTSQFDAIGKDVPEFEYTPRTIAHFHDLASVSQANTKAANIVAADFRQKAAEYRAQAARIREIVEYVGLA QESLPSNVVASAQVLANVANLLNIRDTELSSFLVAAADISLRKTSVEEKRAKARNDSKVLLEYTRKAIARLTYLKRTLAQLEDDVAPCEAQMDNWKNNLA VMASKERQYFQQLSNCKARLNRVSYTPEINHSVLVELGEHKKHLERETKPILTTLKSYQDLPADKALAALAIEEKKRKYATLEKHLGDLLQDLAMQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	1.7	0.8721
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	4.9	0.8500
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	8.7	0.7943
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	9.5	0.7968
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	9.9	0.8320
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	11.5	0.8184
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	12.4	0.7928
AT1G35780			unknown protein		Lus10020921 [exp]	12.8	0.8280
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	15.2	0.8180
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	15.6	0.8288

Compare expression of checked genes

Lus10043401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.