Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27300 261 / 2e-85 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT5G22290 249 / 9e-81 NAC FSQ6, FAN, ANAC089 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) AT3G44290 238 / 1e-76 NAC ANAC060 NAC domain containing protein 60 (.1) AT4G35580 178 / 1e-51 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 177 / 2e-50 NAC ANAC014 NAC 014 (.1.2) AT5G17260 174 / 2e-50 NAC ANAC086 NAC domain containing protein 86 (.1) AT5G24590 172 / 9e-50 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT1G65910 175 / 1e-49 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 164 / 4e-49 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 163 / 5e-48 NAC ANAC020 NAC domain containing protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034183 [exp] 578 / 0 AT5G22290 263 / 5e-85 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10013316 [exp] 346 / 5e-118 AT5G22290 285 / 5e-94 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10005204 [exp] 346 / 6e-118 AT5G22290 292 / 8e-97 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10008285 [exp] 174 / 7e-50 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 174 / 8e-50 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10042284 [exp] 166 / 4e-49 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 166 / 6e-49 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10010148 [exp] 170 / 4e-48 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10007377 [exp] 171 / 7e-48 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161300 [exp] 315 / 1e-104 AT2G27300 273 / 4e-88 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) Potri.011G149300 [exp] 175 / 2e-49 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.003G089800 [exp] 169 / 2e-49 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.008G081500 [exp] 168 / 2e-49 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.012G007500 [exp] 173 / 5e-49 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 172 / 5e-49 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.010G174600 [exp] 165 / 3e-48 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 171 / 8e-48 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 168 / 8e-47 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.001G144400 [exp] 162 / 1e-46 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10043402 pacid=23168395 polypeptide=Lus10043402 locus=Lus10043402.g ID=Lus10043402.BGIv1.0 annot-version=v1.0 ATGGGGTCAACAAATTATGTCGACGGTGGCGGGGTTTCCAGAGAGACACAGATGTCCATAGAGGCTTCCTCCATGTTTCCAGGCTTCCGTTTCTCCCCGA CCGACGTCGAACTCATCTCCTACTATCTCCACAAAAAGATTGACGGCCACGACAAATGCGTCGAGGTCATCCCCCAAGTCGAGTTCTGCAAACACGAGCC CTGGGATTTGCCAGCGAAATCGGTGATAAAATCGGAGACGGAGTGGTTTTTCTTCTCATCACGAGGAAGGAAGTACCCCAATGGATCTCAGAGCAAGAGG GCGACGGAGCTCGGCTACTGGAAAGCCACCGGCAAAGAGCGAAACGTCCGATCAGGCTCCTCCGTCATCGGCACCAAACGCACCCTTGTTTTCCACCTCG GCCGCGCTCCTAAAGGCGAGCGCACTGAATGGATTATGCACGAGTACTCCATGCCTCCCTCCTTCAATCATGAATCTCTGGTTGTATGCCGCCTGAAGAA GAACGTTGATTTCCGCGGCAATCAAAGCTGCAACGGGTTTGCTGAGGAAACCGCTGAGCGTAGAATCATGGAGACGTATGCAGCGGAATGCTCTGCGAAG AAGGCGAGCAGTAGCTCGGCATCCTATTCAAACGAGCAGATGGATTCAGTCTCCAACGACTCGGAGAACAAGCTGTCTAATAATTCAGCCACACCGGCTG CAGCAGAGTCCTCTAGCCGCCACGATACAGGACTGATGGATGATTTGTGCCATCAAGGTTTCGGATTTTCAGGGCGGGAGGACGATTACTACGCTGACAT TCTCAATGACGACATAATCAAACTCGATGAAACTTGTCTAGCGACAGCAGCAGCAATCCCGGTTTCTAGAGCTCCGACAGCCGATGTTCCGGAAACAGCA GTTGCCGATGGAGAGGCAATTAGTGGAGAAGAGAAGGAGCTTCCATTATGGTTAATGTCGCAGCAAGTAGGCTTGGCAGTCAGCCCACGGGTTTAG
AA sequence Show only first row Show all	>Lus10043402 pacid=23168395 polypeptide=Lus10043402 locus=Lus10043402.g ID=Lus10043402.BGIv1.0 annot-version=v1.0 MGSTNYVDGGGVSRETQMSIEASSMFPGFRFSPTDVELISYYLHKKIDGHDKCVEVIPQVEFCKHEPWDLPAKSVIKSETEWFFFSSRGRKYPNGSQSKR ATELGYWKATGKERNVRSGSSVIGTKRTLVFHLGRAPKGERTEWIMHEYSMPPSFNHESLVVCRLKKNVDFRGNQSCNGFAEETAERRIMETYAAECSAK KASSSSASYSNEQMDSVSNDSENKLSNNSATPAAAESSSRHDTGLMDDLCHQGFGFSGREDDYYADILNDDIIKLDETCLATAAAIPVSRAPTADVPETA VADGEAISGEEKELPLWLMSQQVGLAVSPRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10043402 [exp]	0	1
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	7.3	0.7386
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10009268 [exp]	15.0	0.6032
AT1G59650		CW14	Protein of unknown function (D...		Lus10005831 [exp]	17.2	0.6633
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	17.7	0.6926
AT4G30790			unknown protein		Lus10007700 [exp]	18.7	0.6889
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	23.0	0.6749
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	24.7	0.6740
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	28.2	0.6824
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	31.4	0.6739
AT2G22040			Transducin/WD40 repeat-like su...		Lus10026332 [exp]	35.2	0.6428

Compare expression of checked genes

Lus10043402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.