Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06270 58 / 8e-12 unknown protein AT3G11600 57 / 2e-11 unknown protein AT5G22270 41 / 2e-05 BIN4 ? unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034181 [exp] 103 / 2e-29 AT3G11600 87 / 3e-23 unknown protein Lus10016982 [exp] 60 / 2e-12 AT5G06270 122 / 4e-37 unknown protein Lus10021305 [exp] 57 / 4e-11 AT5G06270 122 / 8e-37 unknown protein Lus10004209 [exp] 54 / 6e-10 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 54 / 6e-10 AT5G06270 100 / 4e-28 unknown protein Lus10001804 [exp] 38 / 0.0007 AT2G33510 145 / 8e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G200300 [exp] 61 / 1e-12 AT5G06270 71 / 7e-17 unknown protein Potri.009G161400 [exp] 60 / 2e-12 AT5G06270 91 / 9e-25 unknown protein Potri.006G206000 [exp] 58 / 7e-12 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 57 / 3e-11 AT5G06270 115 / 2e-34 unknown protein Potri.010G241400 [exp] 48 / 9e-08 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 42 / 4e-05 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 38 / 0.0009 AT1G79160 164 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043404 pacid=23168085 polypeptide=Lus10043404 locus=Lus10043404.g ID=Lus10043404.BGIv1.0 annot-version=v1.0 ATGGGGCGGCGTAGTGATCGTCGTCGTCAAGCTGCCAGCTGTCCGCAGTTGGATTTGAGGCTAAACCTGTCGCCCACACCTCCTGGCAATCATTACAACT CCGGCGATCATGATGATGATGATGACCAGGTGGCGGCAGAGTCGTCGTCACCGGTGAGGTCCACATGCTCTTCCTCCTGCGACCAGAATTCCTCGACAGA GGAGGTGACGACGACGACGACACCGCCGGCGATGGTGGTGGTGGGTTGTCCGAGGTGCCTAATGTACGTGATGTTGTCGGAGGTGGATCCAAAGTGCCCG AAATGCAAGAGTTCGGTGTTGCTTCACGATTTCATTAACCCTGATCAACGCCAACCCTCCTCCTCCTCCTCCTCCACAATCTTCCCCAACTAA
AA sequence Show only first row Show all	>Lus10043404 pacid=23168085 polypeptide=Lus10043404 locus=Lus10043404.g ID=Lus10043404.BGIv1.0 annot-version=v1.0 MGRRSDRRRQAASCPQLDLRLNLSPTPPGNHYNSGDHDDDDDQVAAESSSPVRSTCSSSCDQNSSTEEVTTTTTPPAMVVVGCPRCLMYVMLSEVDPKCP KCKSSVLLHDFINPDQRQPSSSSSSTIFPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11600			unknown protein		Lus10043404 [exp]	0	1
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	4.4	0.8806
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	9.1	0.8613
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	9.2	0.8517
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	13.4	0.8240
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	13.6	0.8284
AT4G23210		HIG1, CRK13	cysteine-rich RLK (RECEPTOR-li...		Lus10003735 [exp]	14.1	0.7297
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	14.4	0.8027
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	14.4	0.8445
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	15.4	0.8106
					Lus10025897 [exp]	19.7	0.8358

Compare expression of checked genes

Lus10043404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.