Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 64 / 7e-13 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 60 / 4e-11 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 54 / 7e-09 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT4G18830 46 / 2e-06 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT1G05420 45 / 3e-06 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT3G52525 45 / 3e-06 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT5G01840 43 / 2e-05 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT4G14860 42 / 3e-05 OFP ATOFP11 ovate family protein 11 (.1) AT2G36026 40 / 0.0002 OFP Ovate family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034178 [exp] 101 / 2e-26 AT3G14240 240 / 4e-73 Subtilase family protein (.1) Lus10034150 [exp] 79 / 6e-18 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043433 [exp] 76 / 4e-17 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 64 / 2e-12 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10016979 [exp] 59 / 7e-11 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10014677 [exp] 49 / 4e-07 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10005206 [exp] 47 / 2e-06 AT3G52525 82 / 2e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10006912 [exp] 46 / 3e-06 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10013318 [exp] 45 / 4e-06 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161600 [exp] 108 / 4e-30 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G017500 [exp] 96 / 4e-25 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 91 / 4e-23 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 91 / 1e-22 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 87 / 2e-21 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G153500 [exp] 56 / 6e-10 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.005G211300 [exp] 53 / 9e-09 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.002G051200 [exp] 52 / 3e-08 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.010G087200 [exp] 49 / 2e-07 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.004G003700 [exp] 47 / 5e-07 AT5G58360 70 / 1e-14 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10043406 pacid=23168229 polypeptide=Lus10043406 locus=Lus10043406.g ID=Lus10043406.BGIv1.0 annot-version=v1.0 ATGGGGATGTTTCAAATCAAGCACAGACCCAAAATACTGAACAAGCTCAAATCTTTCTTACTCTTCAACACCAAAAAAGCTACAGAAAGAGATCACTCTG TCGTCTGTGATGAATCACCGCTGAATCACGAGCAGCGTGATCGTGAAGGGCTCCCCGTCGGTTGGTCAGAGAGGCTGGTATTCGAGCCGGCTGGGAGCAC AAGGTCGATACTTGAGGCAGCCAAAGTTCCATTCCCAGACAGTGTAGTGGTAGCATTGGAGAGTGAAAATCCGAGGTTGGATTTTCGAGTTTCGATGGAG GAAATGGCGGAGGCGATTGGGTTAGATGGATCAGAACAACTGGGAGAACTGCTGGAATGGTACTTGAGGATGAACAGAAAGGAGAATCACTGTTATGTAG TAGAAGCATTTGCTCAAATGTTTACTGGCTCCTCTTTCCTTGTCTGTCCTGCTTGCACTACTGCTACTACTACTACTAGTGGATGA
AA sequence Show only first row Show all	>Lus10043406 pacid=23168229 polypeptide=Lus10043406 locus=Lus10043406.g ID=Lus10043406.BGIv1.0 annot-version=v1.0 MGMFQIKHRPKILNKLKSFLLFNTKKATERDHSVVCDESPLNHEQRDREGLPVGWSERLVFEPAGSTRSILEAAKVPFPDSVVVALESENPRLDFRVSME EMAEAIGLDGSEQLGELLEWYLRMNRKENHCYVVEAFAQMFTGSSFLVCPACTTATTTTSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043406 [exp]	0	1
					Lus10033358 [exp]	2.2	0.9250
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	3.2	0.9167
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	5.7	0.8746
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	8.1	0.8913
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	14.8	0.8728
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	15.3	0.8289
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	20.8	0.8647
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	21.4	0.8605
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	23.9	0.8441
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	24.5	0.8588

Compare expression of checked genes

Lus10043406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.