Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 953 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 877 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 867 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G27020 662 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G53550 657 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 639 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 633 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT4G24120 623 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G45450 292 / 1e-94 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034177 [exp] 1242 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10013323 [exp] 1087 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 712 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 708 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 651 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10035194 [exp] 651 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10023240 [exp] 650 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10012549 [exp] 649 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10008869 [exp] 646 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G069200 [exp] 908 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 897 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 896 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 894 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 882 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 734 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 662 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 635 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 617 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 577 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10043408 pacid=23167915 polypeptide=Lus10043408 locus=Lus10043408.g ID=Lus10043408.BGIv1.0 annot-version=v1.0 ATGGCGATCGACCGAAACTTCGACGATGACGACGGCGGCGGAGTCCGTGAACAAAACCGCTACTACGCCGACGAGGTGGAGGACAAGACGAGGTCCCGGA AGAAGAAGGTTTCCGGCTATACCATTACCACTTCCTCCGAAACGGAGCTTGATTCCGTGGAGAAGATCTTCGAGGCTAAAGAGGTGCCTCCGTGGCAGAA GCAGCTAACACTCAGGGCTTTCGTCGTCAGTTTCATTTTGGGGGTTCTATTCACTTTCATCGTCATGAAGCTCAACCTCACCACCGGGATAATCCCCTCG CTCAATGTCTCCGCCGGATTGCTCGGGTTCTTCTTCGTCAAGACCTGGTCCAAGCTGCTCCAGAAGTCTAGACTGCTCAAGCAACCTTTCACCCGCCAGG AGAATACCGTCATCCAGACTTGCGTTGTTGCAACTTCCGGCATCGCCTTCAGCGGTGGTTTTGGGAGTTACCTGTTTGGGATGAGTGAGGTTGTTGCAAG TCAATCCAAAGAAGCCAACTCTGCCAAGAATATCAAAGATCCATCACTGGGATGGATGGTTGCTTTCCTTTTTGTCGTCAGCTTTCTTGGCTTATTCTCT GTTGTTCCTCTTCGAAAGATTATGATTGTGGACTTCAAATTGACATATCCAAGTGGCACAGCAACTGCTCACCTTATCAATAGTTTCCATACTCCTCAGG GCGCCAAGCTAGCAAAGAAGCAAGTGAGAGCATTGGGGAAATTTTTCTCCTTCAGCTTCTTGTGGGGTTTCTTCCAATGGTTCTTTACTGGAGGAGATGG CTGTGGATTTGTGAATTTTCCTACTTTTGGTCTTGAGGCCTATGATCACAAGTTCTTCTTTGATTTCTCTGCTACTTACGTTGGTGTTGGAATGATCTGT CCGTATCTAGTAAATGTATCTTTGCTGCTAGGAGCAATTTTATCATGGGGCATCATGTGGCCTCTGATAAATAATCAAAGAGGTAAGTGGTACGCTTCCG ACCTCCCTCAGAGCAGTCTCTCTGGCCTCCAAGGTTATAAGATCTTCATTGCTATAGCCATGATCCTTGGTGATGGCGTCTACAATTTCGTCAAGGCCTT TGGTCGAACTGTACATGGTTTGTACCAACAGTTTTCACATAAAGAACCGGCCTCCGATCTGCCAGTTGCTGGTAACTTCGCCTCCCCTACCAGTCCTCCA GAAAAGTCATATGATGAACTGAGACGTAATGAACTATTCCTGAAGGACCAGATACCAGTGTGGATTGCTATTGCTGGTTACGTCATAATTGCAGTTGCAT CGGCAATTATTGTTCCTCACATTTTTAATCAGCTGGAGTGGTATCACATTGTAGTAATCTACATAATTGCTCCGGTACTAGCATTCTGCAATGCTTATGG TTGTGGACTAACAGATTGGTCCTTAGCATCTACGTATGGGAAACTGGCCATCTTCACAATTGGGGCATGGGCTGGGGCCTCACACGGTGGAGTTCTTGCA GGGTTGGCAGCATGTGGTGTGATGATGAACATTGTGTCAACAGCATCTGACCTTATGCAGGATTTCAAGACGGGTTACATGACATTGGCTTCACCGAGAT CGATGTTTGTGAGCCAAGTAATCGGAACAGCAATGGGGTGTGTAATAGCACCTTGCGTATTTTGGCTCTTCTACAAGGCATTTGACGACCTAGGGCAGCC CGGATCGCAATATCCGGCACCGTACGCTCTTGTGTACCGGAACATGTCGGTGTTGGGGGTGGAGGGGTTTGCTGCTCTGCCAAAGAACTGTCTGATGCTG TGCTGTATATTCTTCTTTGCGGCTATGCTCATCAACGGAGTGAGAGATGTAGTGGGACAAAAATGGGCGAGGTTCATACCGCTACCGATGGCAATGGCGA TACCATTCTATCTAGGAGGGTACTTTGCGATAGACATGTGCGTGGGGAGCTTGATACTGTTTGTATGGGGGAAGATAAACAAGGAGAAGGCAGATGCATT TGGACCAGCAGTGGCGTCAGGGTTGATATGTGGGGATGGGATATGGACACTGCCGAGCTCGATATTAGTGTTAGCTGGGGTTCATCCTCCGATATGCATG AAGTTCCTGTCAAGGAAACTCAACACAAAGGTCGATGCTTTCATAGGATCTTAG
AA sequence Show only first row Show all	>Lus10043408 pacid=23167915 polypeptide=Lus10043408 locus=Lus10043408.g ID=Lus10043408.BGIv1.0 annot-version=v1.0 MAIDRNFDDDDGGGVREQNRYYADEVEDKTRSRKKKVSGYTITTSSETELDSVEKIFEAKEVPPWQKQLTLRAFVVSFILGVLFTFIVMKLNLTTGIIPS LNVSAGLLGFFFVKTWSKLLQKSRLLKQPFTRQENTVIQTCVVATSGIAFSGGFGSYLFGMSEVVASQSKEANSAKNIKDPSLGWMVAFLFVVSFLGLFS VVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTGGDGCGFVNFPTFGLEAYDHKFFFDFSATYVGVGMIC PYLVNVSLLLGAILSWGIMWPLINNQRGKWYASDLPQSSLSGLQGYKIFIAIAMILGDGVYNFVKAFGRTVHGLYQQFSHKEPASDLPVAGNFASPTSPP EKSYDELRRNELFLKDQIPVWIAIAGYVIIAVASAIIVPHIFNQLEWYHIVVIYIIAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLA GLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFDDLGQPGSQYPAPYALVYRNMSVLGVEGFAALPKNCLML CCIFFFAAMLINGVRDVVGQKWARFIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWGKINKEKADAFGPAVASGLICGDGIWTLPSSILVLAGVHPPICM KFLSRKLNTKVDAFIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	0	1
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	2.4	0.9174
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	3.9	0.9180
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	6.9	0.9004
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	11.5	0.8901
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	11.8	0.8676
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	14.0	0.8914
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	14.4	0.8818
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	16.9	0.8682
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	18.3	0.8702
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	18.4	0.9004

Compare expression of checked genes

Lus10043408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.