Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06590 985 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034176 [exp] 1650 / 0 AT1G06590 1043 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081200 [exp] 1177 / 0 AT1G06590 1103 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043409 pacid=23168366 polypeptide=Lus10043409 locus=Lus10043409.g ID=Lus10043409.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCTGGTGTGTTTGCATTGACGCCGCACAAAGTATCAGTGTGCATTGTGCTTCAATTGTACGCCCCGCCCGCCCAAGCCGTTCCTCCGTCTC CTTTCCTTTTCTCTTCGGTGTCTCAGCACAACCACCTGGGTTTGTACTTGTTAGCTCTCACCAAGGCTCATGATGCCTTTTTGGAGCCAAAACTAGGAGA CCTTCTGACCCAATTGAAACAAATCAGCGGTTCATTGGGTGATTGGTTGATTGAGCATTTATCGAATAGGTTCTCCTCTCTATCTTCACCTGATGATTTG GTTAATCTATTCAGCGAAATTAGAGGGATACTCGGGGGAACAGAATCGGCTGTGATTGAGGATAATCAGGTTGTTTTGGACCCTAACAGTGCTCTGGGAA TGTTTATCCGTCGCTGTGTACTCGCTTTTAACACCTTACCATTTGAGGGTGTATGCCACCTTTTGACAGACATAGGAAATTACTGCAAAGAAGCGCTATC AAGTTGTCTCTCATATGAGGAGCATGGTCTAGATGATTCTGGTAATGATTTGGACACATTATCAGCATACGAGAACATGGACCTGGAAAATATTGTGTTT CAGAAAGTTACAGAAGAAATTGAAGCAACCAAGCAGGCCAGTGAGCGAATCTCTTTTCACCTACATATACTCAAAGCACTTTCTGGACTGGTTGAAGGCG TGGAGATTGTTGGCGGTTCTCTATATAAAGATGGGGGTGAAAGTGGTGAACCTTGCTCCAGTTTTCATACCTATGCCAGTGGATCAAGAGTTGCTGATAC TTCTGGTGACATATTCCTGAGAACCACGGGTCAACTTCAAGGCTTCTTCATGGAACAAGCAGATGAAATTGAGAAGCTTGGTAGTTCATTCCCTTTAAAT GGCTTTGAACTTATCTTAAACCGGATTAAGAAAATGGCACCTGAGTTACATCGTGTACACTTCTTACATTACTTGAATTTCCTTTACCACGATGACTATT TTGGTGCTCTGGAGAACCTCCGACGCTTTTTCGATTATAGTGTAGGAACCGATGGATTTGATACTGCTCCTGCACCATCACGAGTCAAAGGGTTTGAGAG ATATGAGATAGGACTGTTGTGTTTGGGAATGCTACAATTTCACTTTGGCCATCCTCGACAAGCATTGGAGCAATGTAATGATAGCTGTCTTGCATATACT TTGGCCGCTATCTGCACCTTGTCTTCTGAAATGGGTAGCTCAAATACGAGTGGGGTACTTGGAACATCATATTCACCTACAGCCAGCATAGGCACATCAT TGTATTTCAAGCAACAATTGTTTATTCTCTTGAAAGAGTCTCTTAAAAGAGCAGAAAGTTTAAGGCTGAAAAGGCTGGTTGCCTCTAACCATCTGGCTAT GGCTAAATTTGACTTAATGAATGTGCAAAGACCCCTGCTATCATTTGGTCCCAAAACATCCATGAAGCTACGAACGTGTCCAGTCACTGTTTGTAAGAAA TCAAGATTGTGTTTGCATTTAGTTAGTGATTATGCCTCTGAAAGCTCCACGATGACAAATGATGGTGCTTTTAGTACAGCCTGGCTTAACAATTTAAGAA AACCGTTGGGTGCATCGGTGTTATCCCTAGACGGTGGATTTGGGAACAATTCTAGTGCTTTTCAGTTCTGTGCACAGCCAAGTTCAATTCCAACATCTGT TTTGCAATTACTAGGTTCTTCATACTTGTTTCGCGCTACAGCTTGGGAAATATATGGAAGTGCAAGTTGTCCCCCTTCTTTCTTGGGGTTTTGGATATTG ACTCTGTTGCAACCCGTTGAAATACACGGGAGAACCTTGTCCACAACTTTGTTCCTGCAGTGTACGGGGAACATAAGTAGTGAAACTTGTGCTGTTCCCA CCCTCCCTCCCCTTGCTACTCTTGCTCGAATAAACTCTTTGGTCTTTGCAACTTGTTATCTTGACGCTTCAAGTTCATCAGATGCAGCATTGGTGCATGC AAAGCTCATCCAGCACTTGGCAACATTTCAAGGATATAAAGATGCTTTCTCTGTCCTCAAACAAGCAGAGGAGAAGTTTTTGTCAATCTCAAGACCAGTA ATTTTGTTACTTAAATTGCAGCTGCTCCGTGAGCGCGCTTTGCATCGAGGGAATCTAAAGCTAGCACTACAGCTGTGTAATGAGCTTGGAGTTTTAGCAT CACCATTCAAAGGTGTTGATATTCAGCTGAAGTTTGAAGCAAGCATGCGCCATGCTCGGACATTGCTTGCAGCCAAACAGTACAGTCAGGCATCTGCAGT TGGTCATTCACTCTTCTGCCTATGCTATCAATTCAACATGCAGGTTGAGAATGCTAGTGTTCTTCTTATGCTTGCTGAAATTCACAAGACGATGTTCATC TGGAGTATTCATTATGAGCTGACATGGTCTAGTGATGAACCCTCCTTATTTCGTTGGCAGAAAGCTGGAAATGTTATTTTAGGCCTTCCATATGCGCTGG CAAGCCTCTCATTTTGTCAGTCATTCAACTTGGATCTTTTGAAAGCGTCAGCCACTGTCACACTGGCAGAACTGTGGCTCTCACTGGGAAAAAGTCATGC AAAAAGAGCTTTAACTCTGCTACATGGTGCTTTGCCAATGGTTCTCGGTCATGGTGGTCTCGAGCTTCGTGCTAGAGCCCGTCTTATTGAAGCTCAATGC TATTTATGTGACCCAAACTATTCAGTGGTGGAGGACTGGGAGATCGTGGTCGATGCTTTGGGGCAGGCTTCTGAAGAGTTTGAAGTATTGGAGTACCACG AAATGGCAGCAGAGGCTTACTACTTGTTGGCCATGGTTTACGACAAACTGGGAGAGTTGGAGAAAAGGGAAGCAGCTGCAGATTCATTCAAGAAACACAT CTTGGCTCTTGAGAATCCTGAGGAGGGAGTTGATGATGATGATGATTGTTTATCTGGTCTGTTGTAG
AA sequence Show only first row Show all	>Lus10043409 pacid=23168366 polypeptide=Lus10043409 locus=Lus10043409.g ID=Lus10043409.BGIv1.0 annot-version=v1.0 MAEAGVFALTPHKVSVCIVLQLYAPPAQAVPPSPFLFSSVSQHNHLGLYLLALTKAHDAFLEPKLGDLLTQLKQISGSLGDWLIEHLSNRFSSLSSPDDL VNLFSEIRGILGGTESAVIEDNQVVLDPNSALGMFIRRCVLAFNTLPFEGVCHLLTDIGNYCKEALSSCLSYEEHGLDDSGNDLDTLSAYENMDLENIVF QKVTEEIEATKQASERISFHLHILKALSGLVEGVEIVGGSLYKDGGESGEPCSSFHTYASGSRVADTSGDIFLRTTGQLQGFFMEQADEIEKLGSSFPLN GFELILNRIKKMAPELHRVHFLHYLNFLYHDDYFGALENLRRFFDYSVGTDGFDTAPAPSRVKGFERYEIGLLCLGMLQFHFGHPRQALEQCNDSCLAYT LAAICTLSSEMGSSNTSGVLGTSYSPTASIGTSLYFKQQLFILLKESLKRAESLRLKRLVASNHLAMAKFDLMNVQRPLLSFGPKTSMKLRTCPVTVCKK SRLCLHLVSDYASESSTMTNDGAFSTAWLNNLRKPLGASVLSLDGGFGNNSSAFQFCAQPSSIPTSVLQLLGSSYLFRATAWEIYGSASCPPSFLGFWIL TLLQPVEIHGRTLSTTLFLQCTGNISSETCAVPTLPPLATLARINSLVFATCYLDASSSSDAALVHAKLIQHLATFQGYKDAFSVLKQAEEKFLSISRPV ILLLKLQLLRERALHRGNLKLALQLCNELGVLASPFKGVDIQLKFEASMRHARTLLAAKQYSQASAVGHSLFCLCYQFNMQVENASVLLMLAEIHKTMFI WSIHYELTWSSDEPSLFRWQKAGNVILGLPYALASLSFCQSFNLDLLKASATVTLAELWLSLGKSHAKRALTLLHGALPMVLGHGGLELRARARLIEAQC YLCDPNYSVVEDWEIVVDALGQASEEFEVLEYHEMAAEAYYLLAMVYDKLGELEKREAAADSFKKHILALENPEEGVDDDDDCLSGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06590			unknown protein		Lus10043409 [exp]	0	1
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	2.2	0.9309
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019031 [exp]	5.7	0.8777
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	10.4	0.8558
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	11.7	0.8334
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	13.0	0.8566
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	15.0	0.8311
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	15.1	0.8580
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	17.3	0.8038
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10043479 [exp]	19.4	0.8102
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	20.5	0.8520

Compare expression of checked genes

Lus10043409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.