Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44220 188 / 3e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 167 / 7e-52 NHL1 NDR1/HIN1-like 1 (.1) AT5G22200 157 / 4e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 154 / 9e-47 NHL12 NDR1/HIN1-like 12 (.1) AT3G52470 150 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 141 / 6e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 141 / 8e-42 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 140 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 115 / 6e-32 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 102 / 1e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034175 [exp] 339 / 1e-119 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 172 / 4e-54 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 169 / 1e-52 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10013327 [exp] 163 / 5e-50 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 147 / 3e-44 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 143 / 2e-42 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10032932 [exp] 125 / 2e-35 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 119 / 4e-33 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10030193 [exp] 87 / 2e-20 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019600 [exp] 187 / 8e-60 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 167 / 4e-52 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 166 / 2e-51 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.005G088000 [exp] 159 / 1e-48 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 122 / 2e-34 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 117 / 2e-32 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 101 / 1e-26 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 99 / 2e-25 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 62 / 1e-11 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 62 / 2e-11 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10043410 pacid=23168269 polypeptide=Lus10043410 locus=Lus10043410.g ID=Lus10043410.BGIv1.0 annot-version=v1.0 ATGCGGCCACGATTCCGACGACGGCAAGTCGTCGCCCCCCCGGCCACGAAAACCTACATCATAATGGCGGTAGCCGCTTTATCCCTCGTAGGACTCACCA TCCTAATCCTGTGGGCCGTCCTCCGTCCGACAAAACCCACATTCCTCCTCCAAGACGCCACCCTCTACGCCTTCAACCTCACCAACTCCAACCTCTTCCT AACCACCACTCTCCAAGTCACTCTCTCCTCCCGCAACCCCAACCGCCGCGTCGGGGTTGACTACACCCGCCTCGGCATCTACGCTTCCTACCGCAACCAG CAGATCACGCTGGCCACTCAGCTCCCCCAGGGGTACGTGGGGACCAAGGACGTCACTGTGTGGTCTCCTTTCTTGTATGGGGAGACAGTTCCTGTCTCCC CCGTACTGGTCCAGGCCGTGGGTCAGGATCTGAGTGCTGGGGTTTTGATACTGAATGTGAAAGTATACGGGAGGCTGAAGTGGAAAGTTGGGTCTTGGCT TTCGGGGAAGTACCATTTGGCCGTTAACTGCCCGGCTTACCTCAGATCTGCAACCCACTTGGCGGCTAAAGACGGCGCCGGTGCCAGCGCCGGCGGTAGT AGTATGTTTGATGGAGTAGGCGTGGGGATCAAGTATCAGTTTGATAATCAAGGTTGCAATGTTGAAGTCTCCACTTGA
AA sequence Show only first row Show all	>Lus10043410 pacid=23168269 polypeptide=Lus10043410 locus=Lus10043410.g ID=Lus10043410.BGIv1.0 annot-version=v1.0 MRPRFRRRQVVAPPATKTYIIMAVAALSLVGLTILILWAVLRPTKPTFLLQDATLYAFNLTNSNLFLTTTLQVTLSSRNPNRRVGVDYTRLGIYASYRNQ QITLATQLPQGYVGTKDVTVWSPFLYGETVPVSPVLVQAVGQDLSAGVLILNVKVYGRLKWKVGSWLSGKYHLAVNCPAYLRSATHLAAKDGAGASAGGS SMFDGVGVGIKYQFDNQGCNVEVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	1.7	0.9767
AT1G45688			unknown protein		Lus10029743 [exp]	2.4	0.9738
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	4.6	0.9737
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10001319 [exp]	5.0	0.9618
					Lus10011622 [exp]	6.2	0.9635
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	8.2	0.9734
					Lus10038634 [exp]	9.2	0.9515
AT3G19990			unknown protein		Lus10028680 [exp]	10.4	0.9724
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	10.9	0.9723
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	11.0	0.9733

Compare expression of checked genes

Lus10043410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.