Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27260 103 / 2e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 77 / 7e-17 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 71 / 3e-14 hydroxyproline-rich glycoprotein family protein (.1) AT5G22870 64 / 4e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G08160 62 / 2e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 61 / 6e-11 NHL2 NDR1/HIN1-like 2 (.1) AT1G61760 59 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 58 / 4e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 54 / 1e-08 NHL3 NDR1/HIN1-like 3 (.1) AT2G35460 50 / 3e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034173 [exp] 335 / 2e-117 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005216 [exp] 210 / 7e-68 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013329 [exp] 134 / 1e-39 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 82 / 9e-19 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 81 / 4e-18 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021284 [exp] 74 / 2e-15 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10016962 [exp] 61 / 8e-11 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 59 / 3e-10 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 59 / 3e-10 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019800 [exp] 163 / 1e-49 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218300 [exp] 162 / 2e-49 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 108 / 3e-28 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G003800 [exp] 76 / 1e-16 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 75 / 4e-16 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071200 [exp] 76 / 5e-16 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071600 [exp] 71 / 2e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 57 / 1e-09 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 56 / 3e-09 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G020000 [exp] 52 / 3e-08 AT3G52460 48 / 5e-07 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10043411 pacid=23168184 polypeptide=Lus10043411 locus=Lus10043411.g ID=Lus10043411.BGIv1.0 annot-version=v1.0 ATGGAACCCGCCACCGGCTACCCAATCCCTCCTAATCAACAGCGTCCCCCAAACCCCAATGGCTATCCCGCTCCTCCTCCCGGCACAGCTTACCCTTACC AAGCCCCCCTGCAGCCTTCTAATCCCTACTACTACAACCCTCAAAACCCTGCTCCGTATACTGTCGCGCGCCCGACTCTCTACCGCCGATTGATCCTGGT TTTCATCATCGTCACTGCAATCTTCTTCACCGCCCTCTTCATCAGCTGGATTGTCATCCGCCCCCGCGTCCCGGTATTCCACATCACCTCTTTCACTCTC TCCAGCTTCAATTCCTCCAGCCATCAGCTCTCCGGAACCTGGGCAGCTCGATTCGAGGTTTTCAATCCAAACAAGAAGATGGACATCGAGTACGACGAGA TCCAGGCCTTCGTTTTCTTCCGGAAGCAATCCTTGACTCAGAACCGACTCCAGCCGTTCCTTCAGCAGCACAAGAATCTGACCGTGCTGGAGACGGAGTT CTCCATTATCAACACCTTTGTGGATCAGTGGGTGTCCGACGCTGTCGATGGGGAAAAGAAACGTGGCTCTGTCACTTTCGATTTGAAAGTGGTTGCTGAT GTTGGGTTTAGGGTTGGTGAACTGAGAGCCAGGCGACGTCTGCTTCGAGTCGACTGCTATGATCTCACTGTCACCCTTCCCGGGAGTGGTGGATCCGGAA ACTTTACCAAAGGTCCCAGGCAATGCCAGGTTTATACTTGA
AA sequence Show only first row Show all	>Lus10043411 pacid=23168184 polypeptide=Lus10043411 locus=Lus10043411.g ID=Lus10043411.BGIv1.0 annot-version=v1.0 MEPATGYPIPPNQQRPPNPNGYPAPPPGTAYPYQAPLQPSNPYYYNPQNPAPYTVARPTLYRRLILVFIIVTAIFFTALFISWIVIRPRVPVFHITSFTL SSFNSSSHQLSGTWAARFEVFNPNKKMDIEYDEIQAFVFFRKQSLTQNRLQPFLQQHKNLTVLETEFSIINTFVDQWVSDAVDGEKKRGSVTFDLKVVAD VGFRVGELRARRRLLRVDCYDLTVTLPGSGGSGNFTKGPRQCQVYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	6.4	0.8871
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	7.7	0.8649
AT4G25680			PPPDE putative thiol peptidase...		Lus10027510 [exp]	10.2	0.8484
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	10.6	0.8835
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	11.6	0.8323
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	13.0	0.8487
AT5G19570			unknown protein		Lus10012977 [exp]	13.0	0.8511
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	13.2	0.8655
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	13.4	0.8542
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	13.8	0.8539

Compare expression of checked genes

Lus10043411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.