Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49030 1565 / 0 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 268 / 2e-74 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G16715 180 / 4e-46 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 138 / 6e-33 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT1G09620 44 / 0.0007 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034171 [exp] 1882 / 0 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024041 [exp] 237 / 7e-64 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 232 / 2e-62 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10009139 [exp] 181 / 1e-46 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10028505 [exp] 155 / 2e-38 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10034788 [exp] 139 / 4e-33 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10033331 [exp] 137 / 1e-32 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014500 [exp] 1650 / 0 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 246 / 3e-67 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 227 / 1e-62 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G124500 [exp] 180 / 2e-46 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G004100 [exp] 128 / 9e-30 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 125 / 6e-29 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 101 / 2e-22 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06827 [flax] [poplar] zf-FPG_IleRS Zinc finger found in FPG and IleRS
Representative CDS sequence Show only first row Show all	>Lus10043413 pacid=23168015 polypeptide=Lus10043413 locus=Lus10043413.g ID=Lus10043413.BGIv1.0 annot-version=v1.0 ATGGCAGCGAAGAAAGCTTCCCAAGGAGACAAGCAAGATGAAGGAAGATACAAGCACACGGTTGATTTACCAAAGACAGCATTTGGTATGAGAGCAAATT CTCTAGTGAGAGAACCGGAGATTCAGAAGTTATGGGATGACAGTGATGTGTTCAAAAAAGTTACTGACAAAAATAGTGGGGAAAATTTCGTCTTACATGA TGGTCCACCGTATGCAAATGGGGATCTCCACATGGGCCATGCCCTAAATAAAATCTTGAAGGATATAATTAATCGCTACAAGGCATTGAAGTTGGCTATC TATTGTGAAGTTGCTAACTGCCCAACTGTGGGAGTTCTCCAGTCACTGGATCAGGATGCCCGTAAGGATCTGACACCCTTGAAGCTGAGGGCAAAGGCAG CTAAATTTGCTAGAGCAACTGTCAAAACTCAGATGGCATCATTTAAGCGTTATGGAGTGTGGGCAGACTGGGACAACCCGTATCTAACTCTTGATCCACA ATATGAAGCTGCTCAGATTGAAGTATTTGGCAAGATGGCCCTGCAAGGATACATCTACAGAGGCCGGAAACCGGTTTATTGGAGTCCTTCATCACGTACT GCTCTTGCAGAGGCTGAATTGGAGTATCCTGAAGGCCATATTTCGAAGAGTATATATGTTGCACTCAAAATGGTACCAAGAACTTCCAATGCCACACTAG AGGAATTCTTTCCTGATTTGTGCTTGGCTATTTGGACAACAACTCCATGGACGATTCCAGCCAATGCTGCTGTTGCGGTTAATGATAAACTACAATATGC GGTAGTTGAACTTCAATCATTCTTGGAAGATTCTTCTCTTCCAACTGGAAAGCAAATGCAAAGGCCTGGAAATGTTCTCAGGGAACAAAAGCGTCTTTTT CTTGTAGTAGCATCTGATCTTGTGCCAACACTTGAAGCGAAATGGGGCGTGAAGCTTCTTATCAGGAAAAGAATGTTGGGTTCGGAACTAGACGGTTTCA GATACATTCATCCAGTGGATAACAGAGAATGCCCAGTTGTGATTGGAGGAGACTACATTACTACAGAATCTGGAACTGGACTTGTGCATACAGCTCCTGG GCATGGTCAGGAGGACTATATTACTGGTACAAAATATGGATTGCCCATGCTTTCCCCTGTAGATGATGGCGGCAAGTTCACTGAAGAAGCTGGACAGTTT TGTGGGCTTGATGTGCTTGGGGATGGAAATATTGCAGTAGTAAAATACCTGGATGAAAGAATGTCGATCATCATGGAGGAATCGTATCAACACAAGTATC CTTATGATTGGCGAACTAAGAAGCCTACCATATATAGGGCGACTGAGCAATGGTTTGCATCAGTTGAAGGATTCCGGCAGGCTGCCATGGATGCAATAGA ACATGTGACATGGATTCCACTTCAGGCACAAAACAGAATATCTGCAATGACTTCAAGCCGCTCTGATTGGTGCATCTCAAGGCAAAGGTCATGGGGTGTA CCCATCCCAGTATTCTATCATATGGAAACAAAGGAGCCTCTTTTGAATGAAGAGACTGTTGAACATGTTAAGTCAATAATAAGCCAGAAAGGTAGCGATG CTTGGTGGTACATGAAAGTGGAGGACTTGCTCCCTGACAAATATCGTGATAAAGCATTGGAGTATGAGAAAGGCACAGATACAATGGATGTCTGGTTTGA CTCAGGTTCATCATGGGCTGCTGTAGTGGGGAATAGGAACCTTAAGTTCCCTGCAGACTTATATCTTGAAGGTACAGATCAGCATCGAGGATGGTTTCAA AGTTCTCTGTTAACCAGTATCGCCACAAAAGGAAAGGCCCCATACTCGAGTGTCATAACCCATGGATTTGTCTTGGATGAGAGAGGTTACAAGATGAGCA AATCTTTAGGTAATGTTGTGGACCCGCGTGCTATTATTGAAGGAGGGAAAAATTCCAAGGAAGAACCGGCATATGGCGCTGACGTTCTCCGGCTATGGGT TAGCAGTGTGGATTACACCAATGATGTTGTTGTTGGTCGTCAAGTGCTTCAACAAGTTTCTGACATGTATAGAAAGCTGCGTGGAACATTAAGATACCTT CTATCGAATCTGCATGATTGGGAGGCTGATAATGCTATTTCGTACCATGATCTTCCCATGATTGATAAACATGCACTATTTCAGCTGGAAAACGTTGTTA ACAATGTTAAAGTTAGTTATGAGAACTATCAATTTTTCAAAATATTCCAGGCTATACAACGATTTGTTATTGTTGACCTCTCGAATTTCTACTTTGATGT TGCTAAAGATCGACTTTATGTTGGGGGATCAACAAGTTTTACAAGGCGAAGCTGTCAAACAGTCCTAGCTGCACATCTCCTTTCCATTGTGAAGGTTATT GCCCCAATATTGCCTCATTTGGCCGAAGATGTATGGCAGAATCTACCCTTCCAGGTCATTGACACTGATGGTTCGATGGCCAAGTTTGTTTTCGAATCAA AATGGCCTGCCGTGAATGAGAAATGGCTTTCTCTTCCGGACGAAGAAGTCGAATTCTGGGGAAAAGTTCTCGAGATGAGGACGGAGGTGAATAAAGTTCT GGAGATTGCTCGTACTGAGAAGCTGATAGGTTCAAGTTTGGAAGCAAAGGTTTACTTGCATACTAGTGACAGCAGCCTCGCCTCAAGGTTACAAGAGATG TGTGGAACCAGCAATGAAGCAGATGCATTACATCGCATGTTCATTACTTCCCAGGCAGAAGTATTATCCAAGTTGGAGGATGAGTTTGTTGGTACCATAC CATACAGCGGGGAGTATGTGATCCAAGGAAGCAGTAAGGTTTGGATTGGGGTTTCGCGAGCGGCTGGGTCCAAGTGTGAGAGGTGTTGGAACTACACTCC CCAAGTTGGTTCATTCGTTGACCACCCGACCCTATGTGACCGATGTTATAATGTAGTTGGAGTACTGCCAGACCCGGTCATGGCCGCCATTTAA
AA sequence Show only first row Show all	>Lus10043413 pacid=23168015 polypeptide=Lus10043413 locus=Lus10043413.g ID=Lus10043413.BGIv1.0 annot-version=v1.0 MAAKKASQGDKQDEGRYKHTVDLPKTAFGMRANSLVREPEIQKLWDDSDVFKKVTDKNSGENFVLHDGPPYANGDLHMGHALNKILKDIINRYKALKLAI YCEVANCPTVGVLQSLDQDARKDLTPLKLRAKAAKFARATVKTQMASFKRYGVWADWDNPYLTLDPQYEAAQIEVFGKMALQGYIYRGRKPVYWSPSSRT ALAEAELEYPEGHISKSIYVALKMVPRTSNATLEEFFPDLCLAIWTTTPWTIPANAAVAVNDKLQYAVVELQSFLEDSSLPTGKQMQRPGNVLREQKRLF LVVASDLVPTLEAKWGVKLLIRKRMLGSELDGFRYIHPVDNRECPVVIGGDYITTESGTGLVHTAPGHGQEDYITGTKYGLPMLSPVDDGGKFTEEAGQF CGLDVLGDGNIAVVKYLDERMSIIMEESYQHKYPYDWRTKKPTIYRATEQWFASVEGFRQAAMDAIEHVTWIPLQAQNRISAMTSSRSDWCISRQRSWGV PIPVFYHMETKEPLLNEETVEHVKSIISQKGSDAWWYMKVEDLLPDKYRDKALEYEKGTDTMDVWFDSGSSWAAVVGNRNLKFPADLYLEGTDQHRGWFQ SSLLTSIATKGKAPYSSVITHGFVLDERGYKMSKSLGNVVDPRAIIEGGKNSKEEPAYGADVLRLWVSSVDYTNDVVVGRQVLQQVSDMYRKLRGTLRYL LSNLHDWEADNAISYHDLPMIDKHALFQLENVVNNVKVSYENYQFFKIFQAIQRFVIVDLSNFYFDVAKDRLYVGGSTSFTRRSCQTVLAAHLLSIVKVI APILPHLAEDVWQNLPFQVIDTDGSMAKFVFESKWPAVNEKWLSLPDEEVEFWGKVLEMRTEVNKVLEIARTEKLIGSSLEAKVYLHTSDSSLASRLQEM CGTSNEADALHRMFITSQAEVLSKLEDEFVGTIPYSGEYVIQGSSKVWIGVSRAAGSKCERCWNYTPQVGSFVDHPTLCDRCYNVVGVLPDPVMAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	0	1
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	3.9	0.9458
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	4.0	0.9445
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	5.7	0.9439
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	6.3	0.9384
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	6.8	0.9160
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	7.9	0.9398
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	8.5	0.9431
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	8.8	0.9402
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	8.8	0.9107
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	9.8	0.9272

Compare expression of checked genes

Lus10043413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.