Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 356 / 7e-108 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT2G16640 313 / 1e-93 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 306 / 9e-92 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT5G20300 285 / 8e-86 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 96 / 1e-21 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 90 / 1e-19 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 90 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 48 / 1e-05 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33890 45 / 0.0001 Avirulence induced gene (AIG1) family protein (.1) AT4G02482 42 / 0.0002 chloroplast outer envelope GTP-binding protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034170 [exp] 1038 / 0 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10006048 [exp] 384 / 6e-119 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 311 / 2e-92 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 279 / 3e-81 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028706 [exp] 256 / 4e-74 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 242 / 3e-70 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 241 / 7e-70 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10004619 [exp] 127 / 1e-32 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10010292 [exp] 94 / 8e-21 AT1G02280 390 / 1e-137 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G224900 [exp] 439 / 6e-141 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014300 [exp] 414 / 2e-130 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 396 / 2e-124 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131300 [exp] 331 / 2e-100 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 313 / 6e-93 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 312 / 1e-92 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 262 / 2e-77 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 259 / 2e-76 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.014G109400 [exp] 94 / 9e-21 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.002G183400 [exp] 91 / 4e-20 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10043414 pacid=23168262 polypeptide=Lus10043414 locus=Lus10043414.g ID=Lus10043414.BGIv1.0 annot-version=v1.0 ATGATTGCTGTTGGGACAGAAATGGAACTGCGAGAAAAGAGAGAAAATGAAAATTCTGAAGAAGGCCATTTTGATTTTGAAGGTAAATCAAAGTTACCAC TTCCTGATGCAGATTTACAAGACTTGGCCTTTGGAGGAGGCTTTGAGGTTTGTAGTGATTCTCAGACAAACAGTGGCCAAATGATTGCTGTTGGGACAGA AATGGAACTGGAAGAAAACTATTTGTATGATTCTGCTGCATTGGCTAGTAGTAGCCCTGTAGAATCGGAGGGCAGCAGTTTCACAATGGTTACTTCTTGT GATGAGTCTAGGCAAGCTGTTTCTCCTGACTGGTCTGCTGATACAGGTTCTTCATCATTTCGTGGCATGATCCCTCCTCCTCCTCTAGACTCAGCCAAGG TAATATTAAGTGAGGGTAATGTGAACGAGGAGTTTATAGTTAAGTTCTTGAGGCTTATCCATCGACTAGGATACTCTCCTCAACACCCTATTGCTGCTCA GGTAATGTATAGCCTGGTAGGGAAAGGGTATGGAACTCAAGAACTTAGCTTTGACAGATTGGCCATGGAGCTTCAAGAAGAAGGCAAAGAAGACGATGTA GAGTTGTGTTTGAACATTTTGGTTATTGGGAAAACTGGAGTAGGAAAGAGTTCAACCATTAATTCTATATTTGGGGAGAAGAAAGTTGCTATCAATGCAT TTGAACCAGCCACCACTTATGTCAAGGAGGTTTGTGGCACAGTAAGTGGTGTCCGAATTAGAATCTTTGATACACCAGGACTCAGACCTTCCATCAAAGA AGCATCTGCCAACAGAAAGATACTTGCTTCCGTGAAGAAGTTGACTAAGAAGTCTCCCCCGGATATTGTCCTCTATATTGACCGATTGGACGATCTATCA AGTGATCAAACTGATGTTACATTGCTCAGTGAGGTCACCAAGTCATTGACATCATCTATATGGGAAAATGCCATCGTTGTTCTAACTCATGCTTCATCTC TTCCTCCCGAAGGACCATCTGGATCGCCATTGAGTTTCGAGGAATTTGTTACTAGAAGGAGTGATGTTGTTCATCAAGCCATCAGCTTAGCAGTCGGTGA CCCGCTTCTTATGCATAGGAGACCAGTGGCTCTAGCTGAGAATCAGCAGAGCACCAGTAGCTGCTTCAATTGGAATGCACAATTGTTGCTTATGTGTTGT TCTGTGAAGATACTATCAGAAGCAAAGTCGGTAGCCAAGTTTCAGGCGGGCAGTCCTGGCCATGCTTTCCTCCCTCTCCTTCAAAACGTGCTGTTCTGTG ATGATGATGAGTATGACCAGCTCCCATCATTCAAGCCTTTGAGTAAATCACAGGTGGAGAAGCTCAGCAAGGAGCAGAAGAAAGCTTATCTTGACGAGTA TGACTACCGGCTGCAGCTCCTCCACAAGAAGCAATGGAGAGAAGAAGTAAAGGAGATGAACTCCAATGAGTTCAAAGCTTTGCCTGACGTTTCCTTGCCA ACTTCATTTGACAGCAGCTATCCTTCTTTCAGATATCGAGCGTTGGAGACGACATCTCGATTTCTTGTGAGGCCAGTTATGGGTTCAAATGGATGGGATC ATGATTATGGGTATGATGGACTTAGCATTGAAACAGATCACGATTATGGTGCATTTGCTGTTCAGGTCACCAAGGACAAGAAACAATTCAACTTGGTTGT GATTGCCAACTTACAGAGTCAAGTTTGTATTGAGAGATGGTCCAAAATGGATATTGGTGTTTGGATGAACAACAAGAGGAGAGGGAAGATCAGCATTAAA ACCAACAGCAGCAGCTCGGACTTGCAGATTTTTGCAGTGATGGGTGCTGTACCACTTGCCATGGCTGTCTTGAGAAGCATCTTTGGAGAAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10043414 pacid=23168262 polypeptide=Lus10043414 locus=Lus10043414.g ID=Lus10043414.BGIv1.0 annot-version=v1.0 MIAVGTEMELREKRENENSEEGHFDFEGKSKLPLPDADLQDLAFGGGFEVCSDSQTNSGQMIAVGTEMELEENYLYDSAALASSSPVESEGSSFTMVTSC DESRQAVSPDWSADTGSSSFRGMIPPPPLDSAKVILSEGNVNEEFIVKFLRLIHRLGYSPQHPIAAQVMYSLVGKGYGTQELSFDRLAMELQEEGKEDDV ELCLNILVIGKTGVGKSSTINSIFGEKKVAINAFEPATTYVKEVCGTVSGVRIRIFDTPGLRPSIKEASANRKILASVKKLTKKSPPDIVLYIDRLDDLS SDQTDVTLLSEVTKSLTSSIWENAIVVLTHASSLPPEGPSGSPLSFEEFVTRRSDVVHQAISLAVGDPLLMHRRPVALAENQQSTSSCFNWNAQLLLMCC SVKILSEAKSVAKFQAGSPGHAFLPLLQNVLFCDDDEYDQLPSFKPLSKSQVEKLSKEQKKAYLDEYDYRLQLLHKKQWREEVKEMNSNEFKALPDVSLP TSFDSSYPSFRYRALETTSRFLVRPVMGSNGWDHDYGYDGLSIETDHDYGAFAVQVTKDKKQFNLVVIANLQSQVCIERWSKMDIGVWMNNKRRGKISIK TNSSSSDLQIFAVMGAVPLAMAVLRSIFGERK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10043414 [exp]	0	1
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10030818 [exp]	13.0	0.8167
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	14.3	0.7845
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	22.4	0.7969
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10013294 [exp]	25.6	0.8090
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	32.6	0.7692
AT2G40070			unknown protein		Lus10035528 [exp]	35.3	0.7733
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	40.7	0.7571
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	47.8	0.7822
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	50.4	0.7467
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	53.8	0.7755

Compare expression of checked genes

Lus10043414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.