Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15820 155 / 2e-41 unknown protein AT3G61780 62 / 1e-09 EMB1703 embryo defective 1703 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034169 [exp] 735 / 0 AT4G15820 204 / 2e-59 unknown protein Lus10004004 [exp] 64 / 2e-10 AT3G61780 671 / 0.0 embryo defective 1703 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G222000 [exp] 308 / 6e-98 AT4G15820 156 / 7e-42 unknown protein Potri.014G099100 [exp] 60 / 5e-09 AT3G61780 805 / 0.0 embryo defective 1703 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043415 pacid=23168412 polypeptide=Lus10043415 locus=Lus10043415.g ID=Lus10043415.BGIv1.0 annot-version=v1.0 ATGGCGGGTGCTTGTCGCGCCAGCCTCCCCTTCCTCTCACCGCCGCCGGCAACTACTACTACTACTCCGACCGGTGGATTCCGACTGAATCATATCCTCT CAGCTTCTGCCTCCCTGTCGCTTCCTTCCAAGGCGCGACGAAGGAAAAACTACTTGCGTATTAAGATCCTCAAAACCCTAACTAAACCCTCCCCAACAAT TCCTCCTCCCCAGATAGCCCCAGATGAACGACTACTACTTCCCGTTCCTACTCCACCTCAGTCGGTATCTGTTTCCGATGAATCTTCAGATGAAGCGACA ACTGTGGTGGTTTTCCCCGCCGGAGAGATGGACGAAGTTGAGAGCCTTCAAGTCTCCGAGACTGTTGACAATGCTGGAAAATTAGGTGGCGTAAGCGGTA AAATATCTGCGAATTCTGTATTGATTTTCGCTGGTTTTGTGCTTGGATTCGTTGTACTGGAGACCGTAGTTGTTAGGTTGTTGTTTGGAACGTCCGAGAA AGACGATAGGCTGAAAAGTTCAGGTAACGGGAACAATGCTCTTGTGAGTGAGAATGGAAATGAGGTCGAATTGGCAGAGAAGATCGGCGAGATAAGGGCA ATGGCTCGAGAGGCTAGAGAGAGTGAGAGAAAGAAGTTGCCGAAAGGTGAGCAGGAGATTGGGATTGAGAAGGAAGTGAGTGCTCGTTTAGTGAAGTTGC AGAAGAAACTGGAATCCAAGAAAGATGTGATTCCTGGATCACTAATCAATTCTCTCGGGTTGTTTGGTAATGGCAAATATGATTCGAATGGCATTGACGT CTCTGTAGAAGATGAGGAACCTGTGCCATTGATGTTCAAGAAAAAACATAGATTTAGAAGCCCTTCAGTAAAGGCCAGGAGTACTCCGAAGGGATTTTCG GGTTCTAAAGATTCAAACGGTTCAGTTAAAGGTAATATGAATGGTGCATCCAGAAATAGTGGTGTTGGGGCTACTAGGAAGGAAAAGGGGATGAAAGCTG GAAGTTCACAGACGAGTTCATTGAGAAATGGTGAGACTGTTGCTCCAAAGGAGGAGAATTTGAGAAACAAAACTGAATCTGGTGCTGTCCAGGGGGGCGC TGAAGAGATACCAGCAGCTGGAGCTACCAATTCACAGAAAGGAGGTATCGAGAATTTGAGTGTGGCCAAAGGGACAAAGAGATCCAACAAAAACTCCAAT GGTGTAGATTCCTTGAGTCCGGTGAAAAACAACTTGAAGGATAAGAGGTCAGCTTTGGCGACGGACATTTGGTGGTCAAAGCTTCCTAATGTTTTGAGTA ATAGCCCGCAGTGTTCCCCTATGTTTGTACTCCAGGCTATACTTCTGCGCCGGGCCGAACATGAAGGAGAAGGGGGGTTTTATGTTATACAACATAGTCC TGCAGCAGCTGAGCAGAGAAATTCATACACTATTGCATTTCAAGATCTTTCTGATGCAAATAACTTTTGTTTCTTACTGGAATCTTTCTTCGAGGGGCTG GAAGACTTGAGTGTTGATATCGTTCCACTGCCAGTAAGGGAACTGCATGAGGCGGTGAGATCAGAGTCGAAGAAAGTACTTGTTGTCCGGAAGGGGCAAC TTAAGCTTTATGCTGGTCAGCCATTAGAAGAAGTTGAAATGACTTTGCGGTCTATGATTGAACAGAACCATAGCATCTGA
AA sequence Show only first row Show all	>Lus10043415 pacid=23168412 polypeptide=Lus10043415 locus=Lus10043415.g ID=Lus10043415.BGIv1.0 annot-version=v1.0 MAGACRASLPFLSPPPATTTTTPTGGFRLNHILSASASLSLPSKARRRKNYLRIKILKTLTKPSPTIPPPQIAPDERLLLPVPTPPQSVSVSDESSDEAT TVVVFPAGEMDEVESLQVSETVDNAGKLGGVSGKISANSVLIFAGFVLGFVVLETVVVRLLFGTSEKDDRLKSSGNGNNALVSENGNEVELAEKIGEIRA MAREARESERKKLPKGEQEIGIEKEVSARLVKLQKKLESKKDVIPGSLINSLGLFGNGKYDSNGIDVSVEDEEPVPLMFKKKHRFRSPSVKARSTPKGFS GSKDSNGSVKGNMNGASRNSGVGATRKEKGMKAGSSQTSSLRNGETVAPKEENLRNKTESGAVQGGAEEIPAAGATNSQKGGIENLSVAKGTKRSNKNSN GVDSLSPVKNNLKDKRSALATDIWWSKLPNVLSNSPQCSPMFVLQAILLRRAEHEGEGGFYVIQHSPAAAEQRNSYTIAFQDLSDANNFCFLLESFFEGL EDLSVDIVPLPVRELHEAVRSESKKVLVVRKGQLKLYAGQPLEEVEMTLRSMIEQNHSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15820			unknown protein		Lus10043415 [exp]	0	1
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	6.9	0.9014
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	10.2	0.8767
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	14.5	0.8424
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	15.9	0.8718
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	16.5	0.8766
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	17.7	0.8196
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	18.2	0.8033
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	19.6	0.8996
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10039117 [exp]	20.4	0.7955
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	21.0	0.8924

Compare expression of checked genes

Lus10043415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.