Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15830 274 / 2e-91 ARM repeat superfamily protein (.1) AT5G14790 191 / 2e-58 ARM repeat superfamily protein (.1) AT3G01450 190 / 2e-58 ARM repeat superfamily protein (.1) AT3G18530 92 / 6e-21 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034168 [exp] 503 / 0 AT4G15830 290 / 5e-98 ARM repeat superfamily protein (.1) Lus10014533 [exp] 184 / 7e-56 AT5G14790 323 / 2e-109 ARM repeat superfamily protein (.1) Lus10032152 [exp] 183 / 1e-55 AT5G14790 324 / 3e-110 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221700 [exp] 334 / 3e-115 AT4G15830 318 / 5e-109 ARM repeat superfamily protein (.1) Potri.008G221900 [exp] 322 / 1e-110 AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1) Potri.010G014200 [exp] 308 / 4e-105 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10043416 pacid=23168293 polypeptide=Lus10043416 locus=Lus10043416.g ID=Lus10043416.BGIv1.0 annot-version=v1.0 ATGGCGTTAAGGCCCATCGACAATGCTATGCCGGTTCCCCCACCGGAGCGTCCAAAGAAGCAACTCAAACTCTCTGTTGCTCAGAAACAACAGCAGCCTC CTCCTGAATCAGACGAAAACAAGGCACCAGATGCTTCCATCGATTACGTCCCTTCTGAACAACTCACCGCCCTAGAAGATCCCGACTCGGAGATCCAGGA AATGATTGATGGCTTAGAGTCCAAAGACTGGGTGAAGCTCTGCGCTTCTCTGAATAAGGCGAGGCGATTCGCTATTTTCCACTCAGAGCTCTTGCTTCCT AACCTAGAAAAGGCGATGATGGTGCTGGTTAAGGCAATGAAGAACCCTAGAAGTGCTCTGTGCAAGACTTCAATCATGGCTTCCTCTGATATCGTCTCTG CTTACGGCGACAAGCTGCTTGATTCAACAACAGATGCATTTGATAGCTTGCTTCTGCAGCTGCTGCTGAAATCTTCACAGGACAAAAAGTTTGTCTGTGA AGAAGCAGACAGAGCTTTGAACTCCATGGTAAGGTCAATCACTCCACTGTCCCTGCTGCAGAAGCTCAAGGTGTATGGAAGTCACTCTAACCTTAGGGTC AGGGCTAAAGCTGCAGTTTGCATATCCAATACAGTCACCAAGATGGGGTTGGAACCCATGACTGAATTCGGACTCGTACCCCTAGTTCAGATGTCCATAG CCTTGCTGAGTGATAAGCTTCCTGAAGCCAGAGAAGCTGCAAGGAAGATTGTTGTTTCCATATGTGGAGCATACACAAGAGATGAACGAGAGGAGCTGAA GAAGGTGGAGGTGTGGCAAAACTTCTGCGAATTGAATTTGCCACCTGTTGATGCTCAATCTTTGATTAAAATTACAAGAGATTCTGTTGCTGGTGCTGCA GTAGTAGCCAGCAGGATAGCATAA
AA sequence Show only first row Show all	>Lus10043416 pacid=23168293 polypeptide=Lus10043416 locus=Lus10043416.g ID=Lus10043416.BGIv1.0 annot-version=v1.0 MALRPIDNAMPVPPPERPKKQLKLSVAQKQQQPPPESDENKAPDASIDYVPSEQLTALEDPDSEIQEMIDGLESKDWVKLCASLNKARRFAIFHSELLLP NLEKAMMVLVKAMKNPRSALCKTSIMASSDIVSAYGDKLLDSTTDAFDSLLLQLLLKSSQDKKFVCEEADRALNSMVRSITPLSLLQKLKVYGSHSNLRV RAKAAVCISNTVTKMGLEPMTEFGLVPLVQMSIALLSDKLPEAREAARKIVVSICGAYTRDEREELKKVEVWQNFCELNLPPVDAQSLIKITRDSVAGAA VVASRIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	0	1
AT4G02800			unknown protein		Lus10014668 [exp]	2.0	0.9813
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	2.0	0.9703
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	4.9	0.9593
AT4G02800			unknown protein		Lus10000658 [exp]	5.2	0.9691
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	6.3	0.9612
AT3G15550			unknown protein		Lus10025757 [exp]	6.9	0.9670
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10020755 [exp]	8.8	0.9365
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	9.0	0.9569
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	10.6	0.9489
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	11.2	0.9590

Compare expression of checked genes

Lus10043416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.