Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06920 1339 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 383 / 6e-117 PGR3 proton gradient regulation 3 (.1) AT5G59900 311 / 4e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 288 / 4e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 288 / 5e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 287 / 9e-86 RPF2 rna processing factor 2 (.1) AT5G55840 294 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 284 / 1e-84 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 291 / 5e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 281 / 2e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003424 [exp] 356 / 2e-107 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10038657 [exp] 321 / 2e-103 AT3G06920 328 / 4e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 304 / 3e-89 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 298 / 1e-87 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 298 / 2e-86 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 291 / 2e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 293 / 4e-84 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 289 / 8e-84 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 288 / 2e-83 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014100 [exp] 1423 / 0 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 384 / 4e-117 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 308 / 7e-93 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 315 / 2e-92 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 303 / 7e-91 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 307 / 4e-90 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 303 / 4e-89 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 301 / 4e-89 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G249800 [exp] 295 / 7e-87 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G123600 [exp] 293 / 6e-85 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043417 pacid=23168208 polypeptide=Lus10043417 locus=Lus10043417.g ID=Lus10043417.BGIv1.0 annot-version=v1.0 ATGCTGGCAAGGAAATCAGGAGTAATCTTCCGGCACAGCTGCTCGAGTTGCTCGCGGATTTCGATCAGTGTCAAGAACTTCACGTCTTTGACTTCTAATG GATCCTCGTCGGAGCCCGGTGACAAACTATCGAGCCCTGTCCACGCGTTGAGTGAAGAACACTTCAGGAGTTTTGATGTATTGCGGAAGAAGGTAGAGGA TGTGTGCCGAATTGTTGAAGGGGGGCGTTGGGGGCAAGAGGTTGAGAATGCCCTCAACATGTTCGACGAAAAGCCTCAGCCAGAATTGGTGTTTCGAGTG CTGAGGAGGCTCAGGGATGTGAATCAAGCCCTGAACTTTTTCCGGTGGGCTGAAGCCAAAACTGATCAGCCACTCTCTCCTGAAGCTTACAATTCACTTC TCATGGTGATGGCGAAAGCTAAGAACTTTGATTCCCTGGAACAGATTTTTGGAGAGATGAGTATTGCAGGGTTTGGTCCTAGTTATAGTACTTCCGTTGA GTTAGTTGTGAGCTGTGTCCGGTCCCGGGAGCTGAAAGAAGCTTTTGAAATCATACAAACTATGCGGAAGTTCAAATTCCGGCCTGCCTTTTCTGCTTAT ACCACTCTGATTGGTGCACTGTCTTCTGTTCATGAATCCGGACCTATGCTCACTCTATTTCATCAAATGCAAGAGCTGGGATATGAGGTCAGCGTGCACT TGTTTACTACTCTCATTCGAGTTTTTGCCAGGGAGGGCCATGTTGATGCTGCCCTGTCTCTGTTGGATGAGATGAAGAGCAATTCTCTTTATGCTGACAT TGTGCTGTTCAATGTCTGCATTGATTCCTTTGGTAAGGTGGGTAAGGTGGATATGGCTTGGAAATTCTTTCATGAGATGAAAGCACATGGTTTAGTACCT GACGATGTGACATATACTAGTATGATAGGTGTTCTGTGTAAAGCAAATAAATTAGACGAAGCTGTAGAGTTATTTGAGCATATGGATCAGAATAGGAAAG TCCCTTGTGCCTATGCTTACAATACTATGATCATGGGATATGGATCCGCTGGAAAGTTTGATGAAGCATTTGGTCTAATTGAAAGGCAGAAGGAAAAGGG GTCTATTCCCAGTGTAATTGCCTATAATTGTATTCTTACCTGCCTTGGGAATAGTGGAAAACTTGAGGAGGCCTTAAGAATCTTTGAAGAAATGAAGAGA GATGCAGTCCCCAATGCTGCTACCTATAACATTCTGATTGACAGGCTTTGTAGATCAGGGAAAGTTGAGGACGCTTTCAAGGTTCGTGATTCCATGGAAG AAGCCGGCATGTTTCCTAATGTCAGGACTTTAAACATAATGATCGACAGGTTATGTAAAGCACAAAGAGTTGAACAAGCTTATTTAATATTCAAAGGGAT GGACCACAAAGTTTGTACACCCGATGAGGTTACATTTTGTTCACTTATAGATGGTTTGGGGAAGCAAGGCAGTGTAGATGATGCATATAGGCTTTATGAG CAAATGCTGGATTCCTACGAAATGCCAAATGCTATCGTATACACGTCCCTCATTCGCAACTTCTTCGAGCATGGCAGGAAAGAGGATGGCCACAAGATAT ACAAAGAAATGATACAGAGAGGCTGTTCCCCCGACCTTGTGCTTCTTAACACCTACATGGATTGTGCTTTCAAAGCTGGTGAAGCTGAAAAAGGGAGGAG TTTATTTGAAGAGATAAAGGCTTGTGGACTTGTTCCCGATGTTAGAAGCTATTCCATCCTCATTCATGGACTCATCAAAGCTGGTTTGGCACGTGAAACC TATGAATTGTTCTACGCAATGAAAGACCAAGGCTGTGTTTTGGACACTCGTGCTTACAACACTGTTATTGATGGGTTTTGTAAGTCAGGGAAGGTAAATA AAGCTTATCAGCTTCTAGATGAGATGAAGACAAAAGGCCACCATCCAACAGTAGTCACCTATGGTTCAGTCATTGACGGCCTTTGCAAAATCGACAGGCT TGATGAAGCATACATGCTGTTTGAAGAAGCAAGGTCAATTGGCATAGTATTGAATGTCGTTATTTATAGCAGCCTTATTGACGGATTCGGAAAAGTCGGC AGAATCGATGAGGCATATCTAATTATGGAAGAGATGATGCAGAAAGGCTTGACGCCCACCGTGTATACATGGAATTCCTTGCTCGATGCCCTCGTGAAAG CAGAAGAAATCGACGAGGCTGTGGTTTGCTTTCGGCACATGAAGGACCTCAGGTGCATTCCGAATCAAATAACATACAGTATCCTCATAAACGGTCTCTG CAGAATCAGGAAATTCACAAAGGCCTTTGTATTCTGGCAAGAGATGCAGAAGCAAGGGTTGAAACCCAATACTATCACTTATACTACTATGATCTCAGGA CTTGCCAAGGCAGGAAATATCTTCGAGGCTAAAAACCTCTTTGAGAGATTCAAGGCAAATGGAGGTGTGCCGGATTCTGCTAGCTACAATGCGATAATAG AAGGCTTAAGCATAGGCAATAGAGCAACGCATGCATATGAGGTGTTTGAGGAAACCAGATCGAAAGGTTTCAATATCCATACCAAGACCTGCGTCGTCCT TTTGGATGCACTACACAAGGCGGAATGCCTTGAACAAGCTGCAATCGTCGGGGCGGTGCTGAGAGAAACGGCAAAGTCTCAGCATGCTGCAAAACACTGG TAA
AA sequence Show only first row Show all	>Lus10043417 pacid=23168208 polypeptide=Lus10043417 locus=Lus10043417.g ID=Lus10043417.BGIv1.0 annot-version=v1.0 MLARKSGVIFRHSCSSCSRISISVKNFTSLTSNGSSSEPGDKLSSPVHALSEEHFRSFDVLRKKVEDVCRIVEGGRWGQEVENALNMFDEKPQPELVFRV LRRLRDVNQALNFFRWAEAKTDQPLSPEAYNSLLMVMAKAKNFDSLEQIFGEMSIAGFGPSYSTSVELVVSCVRSRELKEAFEIIQTMRKFKFRPAFSAY TTLIGALSSVHESGPMLTLFHQMQELGYEVSVHLFTTLIRVFAREGHVDAALSLLDEMKSNSLYADIVLFNVCIDSFGKVGKVDMAWKFFHEMKAHGLVP DDVTYTSMIGVLCKANKLDEAVELFEHMDQNRKVPCAYAYNTMIMGYGSAGKFDEAFGLIERQKEKGSIPSVIAYNCILTCLGNSGKLEEALRIFEEMKR DAVPNAATYNILIDRLCRSGKVEDAFKVRDSMEEAGMFPNVRTLNIMIDRLCKAQRVEQAYLIFKGMDHKVCTPDEVTFCSLIDGLGKQGSVDDAYRLYE QMLDSYEMPNAIVYTSLIRNFFEHGRKEDGHKIYKEMIQRGCSPDLVLLNTYMDCAFKAGEAEKGRSLFEEIKACGLVPDVRSYSILIHGLIKAGLARET YELFYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLDEMKTKGHHPTVVTYGSVIDGLCKIDRLDEAYMLFEEARSIGIVLNVVIYSSLIDGFGKVG RIDEAYLIMEEMMQKGLTPTVYTWNSLLDALVKAEEIDEAVVCFRHMKDLRCIPNQITYSILINGLCRIRKFTKAFVFWQEMQKQGLKPNTITYTTMISG LAKAGNIFEAKNLFERFKANGGVPDSASYNAIIEGLSIGNRATHAYEVFEETRSKGFNIHTKTCVVLLDALHKAECLEQAAIVGAVLRETAKSQHAAKHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	0	1
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	3.2	0.8064
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	5.5	0.7423
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	6.2	0.7518
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	7.1	0.7790
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	7.3	0.7907
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	9.2	0.7521
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	10.9	0.7376
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	13.4	0.7907
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	20.0	0.7798
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	20.5	0.7424

Compare expression of checked genes

Lus10043417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.