Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18570 680 / 0 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 140 / 1e-35 GTP-binding protein Obg/CgtA (.1) AT4G39520 69 / 3e-12 GTP-binding protein-related (.1) AT1G30580 67 / 2e-11 GTP binding (.1) AT1G17470 66 / 3e-11 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G56050 66 / 3e-11 GTP-binding protein-related (.1) AT1G72660 66 / 4e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G80770 55 / 1e-07 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57960 54 / 3e-07 GTP-binding protein, HflX (.1) AT1G30960 42 / 0.001 GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034166 [exp] 1050 / 0 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 174 / 2e-47 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 137 / 2e-34 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 115 / 1e-27 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10006128 [exp] 69 / 2e-13 AT5G18570 62 / 5e-12 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10005800 [exp] 69 / 5e-12 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 69 / 6e-12 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10038543 [exp] 67 / 1e-11 AT1G30580 713 / 0.0 GTP binding (.1) Lus10023261 [exp] 67 / 1e-11 AT1G30580 711 / 0.0 GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022400 [exp] 730 / 0 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 169 / 2e-45 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 135 / 1e-33 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.007G080900 [exp] 69 / 2e-12 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.011G164000 [exp] 67 / 2e-11 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 67 / 2e-11 AT1G30580 681 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 66 / 4e-11 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.003G063500 [exp] 66 / 4e-11 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 65 / 7e-11 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134900 [exp] 53 / 4e-07 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0023 [flax] [poplar] PF09269 [flax] [poplar] DUF1967 Domain of unknown function (DUF1967) CL0023 [flax] [poplar] PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10043418 pacid=23168141 polypeptide=Lus10043418 locus=Lus10043418.g ID=Lus10043418.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCATATCCGTATCATGCTTCTTTACCCAGGCTCTAGCTCGCTCCAATGCCCGAACTCTCAAGCGTGGAGATCCTGCCAGCAAGAAGTCCT CTAGAAACGCTAACTTCAATCGCACATCCAAACTGAAGCCTCAGAGGACCACCTACAAGCCTCCGCCCCCAACAGTACCCATTCCCGGCGACGGCGGCGA CGCTACCACCTACACTTGCCTACCTGTCCGAGAAGATTTCTCCCTCCCTTCCTTAGTTTCTGCGGCGGAGGTCGTCAGACTTTCTGATTTAGGTGCTGCC GGATTTCCCCAATTGAGCCAAGGAGGAGAAGATGAAGCGGCGGAAGGAATTGAAGATCACGCTAGATACGAGGTGTACGATGCAGCCGATTCTGTATCCG ACGATGACGAGATTGATTTTGACAGTGGAGAGGTGGGTGAGGAAGGCGATGAAAATGATTTCTCCGAGGACGGCGGAGGTCCCTCCTACCAAGTGTTGGA TGAGTTCACCGGAGATGTAGGAGGCAGAATGTTGGAGGATCCTGATTACGAAGGAAACGAAGAAGATGAAGTCAAGGAGAAGGGAGTGCCGGCGGTGATG CGGTGCTTCGACAGAGCCAAAATATACGTGAAAGCCGGCGACGGCGGCAACGGCGTGGTGGCATTCCGCAGGGAGAAGTTCGTGCCATTGGGAGGTCCGT CTGGAGGGGATGGAGGCAGAGGAGGTAATGTGTACTTGGAAGTTGACAGTTCCATGAATTCGCTGTTACCGTTTAGGAACAAAGTGCATCACAGGGCAGG GAGAGGGTCACATGGACAAGGAAGTATGATGAGTGGGGCAAAGGGAGAGGACGTGGTGGTGAAGGTAGCTCCCGGGACGTTGGTTCGGGAGGCCGGAAGA GATGAGGTATTGCTGGAACTGTTGCATCCTGGACAGCGGGCTCTATTGCTACCTGGTGGGAGAGGTGGAAGAGGGAATACTGCATTTAAGTGTGGCAGCA ATAAGGTACCTCGGATTGCTGAGAATGGAGAAGAAGGTACTGAAATGTGGATAGAGCTGGAATTGAAGCTAGTTGCAGATGTGGGTATAGTTGGTGCTCC AAATGCAGGGAAAAGCACACTATTGAGCGTGATCAGCGCTGCACAACCAGCAATAGCAAACTACCCTTTTACTACATTACTCCCGAATCTCGGTGTGGTT TCTTTTGATTATGATTCTACTATGGTGGTAGCAGATCTTCCAGGTTTGCTCGAAGGAGCACACAGAGGTTTTGGTTTAGGGCATGAGTTCCTGCGGCACA CTGAAAGATGTTCTGCACTGATACATGTTGTTGATGGCTCTTTACAGCAGCCGGATCTTGAGTTTGAGGCCGTACGTCTTGAGCTGGAACTCTTCAGTCC TGAACTTGCCGAAAAGCCATATATAGTCGCCTATAACAAAATGGACCTTCCTGAGGCATATGAGAAATGGACCTTTTTCAAGGAACAGCTACAAGCTCAA GGCATTGAACCTTTTTTCATGAGTGCTGTGACCAGAGAGGGCACTCACGAAGTGATTTCTGCAGCTTACGAGCTGCTGCAAAAGAGTAAAAAACCCGATG AAGATTGGGAAGGCCGAATGGATGCTGTAAACTTGAATCATGTAGCTGAGAAGGTGAAGAAACAACAACGAGCTCCAATTAACGACTTTGTGATCTCACA CGACAGCGAATCCAATACATGGCACGTCACCGGGCCTGGGTTGCAACGTTTTGTTCAGATGACAAATTGGCGATATGTGGATTCTGAAAGGAGATTTCAG CATGTCCTGGAGGCCTGTGGGGTAAATAAGTCGTTGTTGAAGATGGGTGTCAAGGAGGGTGACACAGTGATTGTTGGAGAGATGGAAATGGAATGGCACG ATTATCCGGAGAGATCGGGTCCATCGAACATGAGGAGGCGCTCACTTGATTCAGCTAGATGGCCTCAACGGGAATGA
AA sequence Show only first row Show all	>Lus10043418 pacid=23168141 polypeptide=Lus10043418 locus=Lus10043418.g ID=Lus10043418.BGIv1.0 annot-version=v1.0 MAATISVSCFFTQALARSNARTLKRGDPASKKSSRNANFNRTSKLKPQRTTYKPPPPTVPIPGDGGDATTYTCLPVREDFSLPSLVSAAEVVRLSDLGAA GFPQLSQGGEDEAAEGIEDHARYEVYDAADSVSDDDEIDFDSGEVGEEGDENDFSEDGGGPSYQVLDEFTGDVGGRMLEDPDYEGNEEDEVKEKGVPAVM RCFDRAKIYVKAGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVYLEVDSSMNSLLPFRNKVHHRAGRGSHGQGSMMSGAKGEDVVVKVAPGTLVREAGR DEVLLELLHPGQRALLLPGGRGGRGNTAFKCGSNKVPRIAENGEEGTEMWIELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVV SFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALIHVVDGSLQQPDLEFEAVRLELELFSPELAEKPYIVAYNKMDLPEAYEKWTFFKEQLQAQ GIEPFFMSAVTREGTHEVISAAYELLQKSKKPDEDWEGRMDAVNLNHVAEKVKKQQRAPINDFVISHDSESNTWHVTGPGLQRFVQMTNWRYVDSERRFQ HVLEACGVNKSLLKMGVKEGDTVIVGEMEMEWHDYPERSGPSNMRRRSLDSARWPQRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	2.0	0.8858
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	5.1	0.8979
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	5.9	0.8352
AT3G04550			unknown protein		Lus10022014 [exp]	6.5	0.8767
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10003289 [exp]	6.6	0.8851
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	14.1	0.8775
AT4G38260			Protein of unknown function (D...		Lus10026547 [exp]	14.9	0.7556
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	17.8	0.8851
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	17.9	0.8420
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	21.2	0.8745

Compare expression of checked genes

Lus10043418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.