Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39090 700 / 0 APC7, AtAPC7 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G48150 56 / 6e-08 CDC23, APC8 anaphase-promoting complex subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034164 [exp] 951 / 0 AT2G39090 801 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004242 [exp] 57 / 3e-08 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10042152 [exp] 57 / 4e-08 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215100 [exp] 803 / 0 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.010G022100 [exp] 801 / 0 AT2G39090 747 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.012G075000 [exp] 53 / 6e-07 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043419 pacid=23168070 polypeptide=Lus10043419 locus=Lus10043419.g ID=Lus10043419.BGIv1.0 annot-version=v1.0 ATGGATATCTCCAAAGAACAGATCGCCGCTCTCCTCGATCACGACCTCCCCGCCTCCGCTCAAATGCTCGGCTGCTTCCTTGCTTCCTCTACTTCGGCTA ACCCTGAAACTAGCCCTCATCTCAAGGCCGAAAACCTGATTCTTCTTGGAGACTCATTGTTACTCGGGAGGGAGTATAAAAGGGCTATTCATACATATAA GCAAGCGTTGCAGTGCTGTAAGATTATCCCCAAACAAAATTCAACTTCTGCTAGAACTTCACTATCCACCAGGTCTTCTTCGCCAAGTTCTTTAAACGTT TCAGTTATTAATGAAAACGAGGTTAAGTTCAAGATTGCTTCTTGTCATTTCTCGCTGAATGAAACCAGATTGGCTATAGCTGAGGTAGCTTCGTTTGCTT TTCACGCATCTCTACATCTTGGACTACAAATGTTTTGTGGTTTTGTTAGAGATTTTCTGATGGAGGGAATTCCCAGCAAAGCAAGAACTTTGCAGATGAG TTTGTTATTAGCGAAGCTTTTCCGACATTCCAGACATAATCGATATGCTATTGCTTGTTACAGAGAGTGTTTAAGGCATTGTCCCTATGTAATTGAAGCT ATTATAGCCTTAGCTGAACTGGGAGTTGCCGCCAAGGATATAAATTCATTGCTCTCACAGACTCCACATAGAAGTGGAAGGGCACCATTTGACCATGCTG ACTCAAATAGATGGCTACCACGCTATGTTGAGGCGCAATGTTGTGTGGCTGCTAATGATTACAGAGGGGGATTGGAGCTCTTTGCTGAACTTCTACAAAG GTTTCCTAGCAACATACACATATTACTTGAAACTGCTAAGGTAGAGGCCATTACTGAAAAGAATGATGAAGCTATAGTGAACTTTGAAAAGGTGCGCTCG CTGGATCCATATGTCATTACATATATGGATGAGTATGCAATGCTTTTGAAGACAAAGTCTGACTACACAAAGTTGAATAAACTTGTTCATGATCTTCTCA GTATTGATCCTACGAGACCGGAAGTCTTTGTAGCTTTGTCAGTTTTGTGGGGAAGGAAGGATGAGAGAGGAGCTTTGTCTTATGCTGAGAAGAGCATCCG AATTGATGAGAGGCACATACCAGCATACATTATGAAGTTTGTGCCTGATGGAACAAATTGTCTTGGTCCAAGTTGCAGTTCCACTTCATTGGAGGTTGGA TCTGTATGCTCAATGAAGGTTGAGTTCCATAATCGCTTGATCGAATGTGACTTGAGGATCAATTGTATGTCTCAGGGGAAGATACTTCTATCACTAAAGA GACCAGAAGCAGCTGTGCTAGCATTCAGGGGAGCACAAGATTTGAGATCTGATCTTCGTTCATATCAAGGTCTTGTTCATGCTTATCTCGCTTTCTCCAA GACCAAAGAAGCACTGCACGCTGCTAGGGAGGCTATGAAGGCCATGCCTCAATCTGCAAAAGCTCTAAAATTAGTCGGGGATGTGCATGCTAGCCACTCA AGTGGCAGGGAAAAGGCGAAAAAGTTTTATGAGTCAGCGTTGAGGCTGGAACCTGGATACCTTGGAGCTGCAATGGCTTTAGCGGAGCTCCATGTCATAG AGGGTAGAAATTCAGATGCAGTATCTCTGCTTGAGAGGTACCTAAAAGATTGGGCTGATGACTCGCTTCATGTCAAGCTGGCACAAATATTTGCCGCCAC AAATATGTTGCAAGAAGCTTTGTCTCACTTTCAGGCTGCACTAAGGTTGAATTCCCAGAATGAAGCAGCAAAGAAAGGCTTAGAGCGCTTGGAGAAACAA ATGAAGGGGGTGGATCCGGATGCCCCTGAAGAAGATGAAGAAAATGAAGTTGAGGATGGCGATGAAGAACCAGATGAGATAGAGCTTCTTCGAGAGTAA
AA sequence Show only first row Show all	>Lus10043419 pacid=23168070 polypeptide=Lus10043419 locus=Lus10043419.g ID=Lus10043419.BGIv1.0 annot-version=v1.0 MDISKEQIAALLDHDLPASAQMLGCFLASSTSANPETSPHLKAENLILLGDSLLLGREYKRAIHTYKQALQCCKIIPKQNSTSARTSLSTRSSSPSSLNV SVINENEVKFKIASCHFSLNETRLAIAEVASFAFHASLHLGLQMFCGFVRDFLMEGIPSKARTLQMSLLLAKLFRHSRHNRYAIACYRECLRHCPYVIEA IIALAELGVAAKDINSLLSQTPHRSGRAPFDHADSNRWLPRYVEAQCCVAANDYRGGLELFAELLQRFPSNIHILLETAKVEAITEKNDEAIVNFEKVRS LDPYVITYMDEYAMLLKTKSDYTKLNKLVHDLLSIDPTRPEVFVALSVLWGRKDERGALSYAEKSIRIDERHIPAYIMKFVPDGTNCLGPSCSSTSLEVG SVCSMKVEFHNRLIECDLRINCMSQGKILLSLKRPEAAVLAFRGAQDLRSDLRSYQGLVHAYLAFSKTKEALHAAREAMKAMPQSAKALKLVGDVHASHS SGREKAKKFYESALRLEPGYLGAAMALAELHVIEGRNSDAVSLLERYLKDWADDSLHVKLAQIFAATNMLQEALSHFQAALRLNSQNEAAKKGLERLEKQ MKGVDPDAPEEDEENEVEDGDEEPDEIELLRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	0	1
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	9.6	0.7501
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	11.5	0.6901
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	13.6	0.7308
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	13.6	0.7523
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	19.1	0.7394
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	19.2	0.7326
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	21.2	0.7275
					Lus10030985 [exp]	23.9	0.7031
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	25.0	0.7075
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	31.8	0.6946

Compare expression of checked genes

Lus10043419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.