Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18590 542 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 194 / 8e-53 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 186 / 4e-50 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 171 / 7e-46 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 105 / 1e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 96 / 3e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 98 / 4e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 87 / 1e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G16400 86 / 3e-17 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2) AT2G33070 85 / 4e-17 NSP2, ATNSP2 NITRILE-SPECIFIER PROTEIN 2, nitrile specifier protein 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034163 [exp] 1077 / 0 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031497 [exp] 200 / 8e-55 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 194 / 2e-52 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 192 / 5e-52 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10028825 [exp] 174 / 1e-46 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 172 / 7e-46 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10004499 [exp] 174 / 1e-45 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10017457 [exp] 170 / 3e-45 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 169 / 3e-45 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214900 [exp] 643 / 0 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 641 / 0 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 192 / 3e-52 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G230300 [exp] 189 / 3e-52 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G031200 [exp] 186 / 4e-51 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.013G018800 [exp] 188 / 9e-51 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G013000 [exp] 147 / 1e-36 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 144 / 1e-35 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 96 / 3e-20 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 94 / 7e-20 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10043420 pacid=23168230 polypeptide=Lus10043420 locus=Lus10043420.g ID=Lus10043420.BGIv1.0 annot-version=v1.0 ATGTTTAGCTTCTCCAAAAGACGTACTAAGCTTGGCAGGGTGAAGAAGGTGGTACAGCTCTCTGAATCGATATCTACACCAGGAGCTAGAAGCCCTGCTA GACCTCCAAAACGGGCTCCCAATCCCACTCATAATGACGAAGGAGGAGGAGGTGCGGCCACAACCAGCCATTGTGATGAGAAACTTGACTGTCAATGCCA ACCATCATCTGCATCTGCTTCTTCTGAGAATTGGATGGTTTTGTCTATTGCTGGAGATAAACCGCCTCCTCGCTTCAATCATGCAGCGACTGTAATTGGC AACAAAATGATAGTTGTTGGTGGTGAATCTAGTGGTGGTTTGTTGGATGATGTGCAGGTTTCTTGGGGCAAGAAGGCACTTCTAATTGGAGGCAAAACTG ATCCTCACAGCGACAGAATTTCAGTATGGGCATTTGATACAGAAACTGAATGCTGGTCCCTTATGGAAGCCAAAGGAGACATACCGATTGCTCGCTGTGG CCACAGTGTGGTCAGGTCAAGCTCTACTCTTATTCTGTTCGGCGGGGAGGATGCTAAAAAGAAGAAACTGAATGATCTTCACATGTTTGATCTAAAGTCT TTGACATGGCTTCCTCTGCATTGCACAGGAACAGGACCGTCTCCTAGATCTAACCATGTAGCTGCTCTCTGTGATGATAAGATGCTTCTAATCTTCGGAG GGGCATCAAAGTCACGGACGTTGAACGATTTGTATTCGCTAGACTTTGAATCGATGGTGTGGTCAAGGGTAAAGATAAGGGGCTTCCATCCATCACCTAG AGCAGGTTCCTGTGGAGTTCTATGTGGAACCAAGTGGTACATAGCAGGTGGAGGAAGCAGGAAAAAGAGACACTCAGAGACATTGGTTTTTGATGTTCTG AAAGTAGAATGGTCTGTGGTCTTTGCATCACAGTCGTTTTCCATCACGACCAACAAGATGGTGTGGTCAAGGGTAAAGATAAGGGGCTTCCATCCATCAC CTAGAGCAGGTTCCTGTGGAGTTCTATGTGGAACCAAGTGGTACATAGCCGGTGGAGGAAGCAGGAAAAAGAGACACTCAGAGACATTGGTTTTTGATGT TCTGAAAGTAGAATGGTCTGTGGTCTTTGCATCACAGTCGTTTTCCATCACGACCAACAAGGGCTTTAGCTTAGTGCTTGTACAACATAAAGAAAAGGAT TTCCTGGTTGCATTTGGAGGATCCAGAAAGGAGCCATCAAATCAGGTAGAAGTAATGGGATTGGACAAGCACGAATCATTGATGGGTCGAATGTCTGCTC CGGGTAAAGGTCCCGGATCTTTGGCTTTTGAGAAACATCATTCTTCATCCACAGGTCATGGGGTGTCGCGGCGTTCCGGTGATTCTGTTGGTAGACAAAA CTTGGCTTCTGCGATTGAACATCATGGTTCCGGTAGAAAATCCTTGTCAGACTCTTCTCTGTTGGATACGGGCTGTGCCTCTGGAAATGTCTCCCTGAGA AAGCAATTTCATGAGGATGAACACAACAGAATCGTTAAGACAGTTCAGAGTTCAGACGAAGGACAGCTTGATACATCTCATAACCAGCTTGGAAAGATCA TCAGGGAAGATGACTCTTGTGTGTACGGTTCCGAATGTTCAAACTTCCATAAGCAGCAAGTGAGTTCAGACCATATGGCCGAAAACGAGCGAGTGGCAGT GCCGGAGAACGACTTCCCACCTGGAGGGCCTCATTCAAGCATCTATCAAATGTACGAATCCAAAATAGCGGCTCTAATAAAGAAGAATGGGGTGCTAGAA GGACAAGTTGCGGCCGCATTGGCAGGTCGAGAGGCAGCTGAGAAAAGCTTCTCTGCTGTGGTGAAAAGCAAGCAGGAGGTGGAGAAGAGGTTGGGGGACG CTGGAAGAGAAGTGGAATTGCTAAAGGAGAAGCTGGCTGCTCTGGAGTTAGCTCACGAAGAGGCCAACAACATGTCGAATATAGTCCATTCTGACAACGT TAGACTTGAGCATGATGTGGCTTTCCTCAAGGCAGTTTTTGATGATACCCAGAAGGAGTTGCATTCAACTAGGGGAGTCCTTGTAGGGGAAAGGGCAAGA GCATTTCAGCTTCAGGTTGAGGTGTTCCATCTCAAACAAAGATTACAGTCTCTGGAAAACAGAGCACCGACTCCACGAAAACCGTACCATGTCTAG
AA sequence Show only first row Show all	>Lus10043420 pacid=23168230 polypeptide=Lus10043420 locus=Lus10043420.g ID=Lus10043420.BGIv1.0 annot-version=v1.0 MFSFSKRRTKLGRVKKVVQLSESISTPGARSPARPPKRAPNPTHNDEGGGGAATTSHCDEKLDCQCQPSSASASSENWMVLSIAGDKPPPRFNHAATVIG NKMIVVGGESSGGLLDDVQVSWGKKALLIGGKTDPHSDRISVWAFDTETECWSLMEAKGDIPIARCGHSVVRSSSTLILFGGEDAKKKKLNDLHMFDLKS LTWLPLHCTGTGPSPRSNHVAALCDDKMLLIFGGASKSRTLNDLYSLDFESMVWSRVKIRGFHPSPRAGSCGVLCGTKWYIAGGGSRKKRHSETLVFDVL KVEWSVVFASQSFSITTNKMVWSRVKIRGFHPSPRAGSCGVLCGTKWYIAGGGSRKKRHSETLVFDVLKVEWSVVFASQSFSITTNKGFSLVLVQHKEKD FLVAFGGSRKEPSNQVEVMGLDKHESLMGRMSAPGKGPGSLAFEKHHSSSTGHGVSRRSGDSVGRQNLASAIEHHGSGRKSLSDSSLLDTGCASGNVSLR KQFHEDEHNRIVKTVQSSDEGQLDTSHNQLGKIIREDDSCVYGSECSNFHKQQVSSDHMAENERVAVPENDFPPGGPHSSIYQMYESKIAALIKKNGVLE GQVAAALAGREAAEKSFSAVVKSKQEVEKRLGDAGREVELLKEKLAALELAHEEANNMSNIVHSDNVRLEHDVAFLKAVFDDTQKELHSTRGVLVGERAR AFQLQVEVFHLKQRLQSLENRAPTPRKPYHV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	0	1
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	1.0	0.8357
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	5.3	0.8036
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	6.5	0.7696
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	8.5	0.7483
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	9.4	0.7486
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	10.0	0.7704
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	13.4	0.7828
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	13.5	0.7437
AT3G62370			heme binding (.1)		Lus10011771 [exp]	15.0	0.6678
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	15.9	0.7381

Compare expression of checked genes

Lus10043420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.