Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28600 286 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G61240 46 / 3e-05 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G16840 46 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45810 45 / 7e-05 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 42 / 0.0005 ATRH8 RNAhelicase-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034162 [exp] 644 / 0 AT2G28600 311 / 3e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017804 [exp] 45 / 7e-05 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10037527 [exp] 45 / 8e-05 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011466 [exp] 45 / 9e-05 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020088 [exp] 43 / 0.0003 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10006736 [exp] 43 / 0.0003 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10030377 [exp] 42 / 0.0008 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 42 / 0.0008 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234000 [exp] 377 / 4e-127 AT2G28600 417 / 8e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G081100 [exp] 45 / 7e-05 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 43 / 0.0004 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10043421 pacid=23168178 polypeptide=Lus10043421 locus=Lus10043421.g ID=Lus10043421.BGIv1.0 annot-version=v1.0 ATGGCCAAAGGCGATGACGCGTTGGCCAGGAAGAAGAATAAATCTAGAAGGAAGAAGCAGCAGAAGGATACTTCTTCTTCCGCCGTAACTGCTCGCGTCG CTTCCATTATTGCCTCCAAGAAACGTCGCCTCTCCGGGAAGCGTCGTCAGTGTCAGGGAATGTGCTTTAGTCTACCAACTCTAGAGGACCCCTTCAATGA CAAGTTAGGTAAAACTGATTTCCCGAAGAAAGATGTCAAAAGTAAAAAAACTCTCTCGTCCAAAAGACAAGATAGGGACGCTTTGAAAGGAGATAGGGCT GCATCTAATGCAGAATCTATTGGCAATGACGGAGGGAAGTTGGGTCTTCAGAAAGGGAGAGGCTTGAGTAGGCATGGAAACACAGCAACTCATCTGGACA AAGATACCGGAAAAAATAGTCATCAGCTGCATGCATTTGGGAATTTGGATCGTCCATCTAAGTTCCTTCTTCTGTGCTTGAATGCTATAGAAAGTGCATT GCGCCTAGAGGGTTTATATGGAAAGGAGGAGGACAAGCCTATATTTGTTGATCCATGGGGAGTTGAGTTTCTGAAATGTTATTCTGGTGGGAAGGACATA TTGGATACTGGCGGATCATCTTGTACAATTGAGCAAATTGCCTGGATTGTTTCTATTGCTGCTGATTCATTTGCTAGAAAGGAAAAAGAAGGAGTATCAT TCACGAGCCCATTTCTTCTTTTCCTTGTCCCGTCGCAGGAAAAGGCTATGCAGGTACGCACAGTTTGCAAACCTCTGAAATCACTTGGCGTACATACAGT CAGCTTACATCCTGGTGCATCCCTGGAACACCAAATTAATGGTCTGAAGAGTTGCGAACCAGAGTTTCTTGTATCAACACCTGAGAGACTCCTGGAGCTT GTTTCGGCTAAAGCTATTAACATATCAGATGTTTCATTCCTGGTTGTTGATGGACTAGAGACTCTAAGTAAAGCTGGAAACATTGACGCTTTAACTTCTA TAAGGCAAGCTATATCTAGAAGCTCTAGTGTTATGGTGTTCAACAGTCATAATTCTGCAGCAGCACTTGAAAAGATTCTCCCAGGACCAGTGTCTAGACT GTCTCTTGGTCAATCTATACACAGTCAGAGTGCTTCTTGCATTGCGCCAAACAAGTCCCTGACGCCTTGA
AA sequence Show only first row Show all	>Lus10043421 pacid=23168178 polypeptide=Lus10043421 locus=Lus10043421.g ID=Lus10043421.BGIv1.0 annot-version=v1.0 MAKGDDALARKKNKSRRKKQQKDTSSSAVTARVASIIASKKRRLSGKRRQCQGMCFSLPTLEDPFNDKLGKTDFPKKDVKSKKTLSSKRQDRDALKGDRA ASNAESIGNDGGKLGLQKGRGLSRHGNTATHLDKDTGKNSHQLHAFGNLDRPSKFLLLCLNAIESALRLEGLYGKEEDKPIFVDPWGVEFLKCYSGGKDI LDTGGSSCTIEQIAWIVSIAADSFARKEKEGVSFTSPFLLFLVPSQEKAMQVRTVCKPLKSLGVHTVSLHPGASLEHQINGLKSCEPEFLVSTPERLLEL VSAKAINISDVSFLVVDGLETLSKAGNIDALTSIRQAISRSSSVMVFNSHNSAAALEKILPGPVSRLSLGQSIHSQSASCIAPNKSLTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	0	1
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	1.7	0.9784
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	1.7	0.9733
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	3.2	0.9701
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	4.0	0.9765
AT1G24310			unknown protein		Lus10015795 [exp]	6.5	0.9574
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	6.6	0.9712
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	6.9	0.9646
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	8.4	0.9650
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	8.5	0.9638
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	9.5	0.9695

Compare expression of checked genes

Lus10043421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.