Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31740 141 / 2e-40 BGAL15 beta-galactosidase 15 (.1) AT5G20710 133 / 2e-37 BGAL7 beta-galactosidase 7 (.1) AT3G13750 125 / 1e-34 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 120 / 6e-33 BGAL8 beta-galactosidase 8 (.1.2) AT5G63800 120 / 8e-33 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT5G56870 115 / 4e-31 BGAL4 beta-galactosidase 4 (.1) AT1G77410 115 / 5e-31 BGAL16 beta-galactosidase 16 (.1) AT4G26140 114 / 1e-30 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 112 / 3e-30 BGAL2 beta-galactosidase 2 (.1) AT1G45130 110 / 1e-29 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011237 [exp] 120 / 4e-33 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10006733 [exp] 120 / 5e-33 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10020875 [exp] 119 / 1e-32 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10015625 [exp] 118 / 4e-32 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 118 / 5e-32 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10020877 [exp] 117 / 6e-32 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10000701 [exp] 117 / 9e-32 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10018138 [exp] 117 / 1e-31 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033502 [exp] 117 / 1e-31 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025701 [exp] 132 / 2e-37 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.001G025800 [exp] 129 / 6e-36 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.001G200400 [exp] 121 / 2e-33 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 120 / 6e-33 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.011G044300 [exp] 116 / 1e-31 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.005G069200 [exp] 116 / 2e-31 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.009G012400 [exp] 116 / 2e-31 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.013G105100 [exp] 115 / 2e-31 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 113 / 1e-30 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G232600 [exp] 112 / 3e-30 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10043422 pacid=23168351 polypeptide=Lus10043422 locus=Lus10043422.g ID=Lus10043422.BGIv1.0 annot-version=v1.0 ATGGCTTCTACAGCAGCAATAGCACTCTCACAAAAGTTATCTCTATTGTTCCTCCTAGTCTTATGTGCTTCCTGTGTAATATTGTCTTCCGCCACAACCG TGTCCCGCGACGGTCGAGCAATCACCATCGATGGCAAACGCAGAGTCCTCCTCTCTGGCTCAGTCCATTACCCACGAAGCACCCCGCAAATGTGGCCGGA GCTGATTTCGAAAGCCGAGGAAGGAGGGATTGATGTGATAGAGACGTACGTGTTCTGGAATGCGCACGAGCCAAGTCGTCGGCAGTACGATTTCAGTGGT AATCTGGATTTGATAAGTTACTAA
AA sequence Show only first row Show all	>Lus10043422 pacid=23168351 polypeptide=Lus10043422 locus=Lus10043422.g ID=Lus10043422.BGIv1.0 annot-version=v1.0 MASTAAIALSQKLSLLFLLVLCASCVILSSATTVSRDGRAITIDGKRRVLLSGSVHYPRSTPQMWPELISKAEEGGIDVIETYVFWNAHEPSRRQYDFSG NLDLISY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	1.4	0.9415
AT3G52740			unknown protein		Lus10014197 [exp]	2.8	0.9242
					Lus10037540 [exp]	3.2	0.9059
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	4.0	0.8937
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	6.2	0.8778
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	7.2	0.9070
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	7.3	0.8886
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	7.9	0.9144
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	8.8	0.8958
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	9.2	0.8466

Compare expression of checked genes

Lus10043422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.