Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52900 149 / 2e-45 Family of unknown function (DUF662) (.1) AT2G36355 139 / 1e-41 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 139 / 2e-41 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G36410 139 / 2e-41 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT2G27740 137 / 1e-40 Family of unknown function (DUF662) (.1) AT3G09980 123 / 2e-35 Family of unknown function (DUF662) (.1) AT5G03660 114 / 1e-31 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034160 [exp] 255 / 2e-87 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10019529 [exp] 139 / 2e-41 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 139 / 2e-41 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10023876 [exp] 138 / 3e-41 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10027724 [exp] 134 / 2e-39 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 132 / 6e-39 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 120 / 7e-34 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235600 [exp] 159 / 9e-50 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 129 / 1e-37 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 127 / 1e-36 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 118 / 2e-33 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10043423 pacid=23168017 polypeptide=Lus10043423 locus=Lus10043423.g ID=Lus10043423.BGIv1.0 annot-version=v1.0 ATGCAGCAGAGCAGAGTTTTGAAGCAACAGCAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCACAGTTGGGTGGACATATGCTTAGTTGGG TTTTCCCCATTTGGTACTCAAGAATGTGTCTTGCATTCCAAGCTTTAGGCCTCAATATAAAGAAACAAAGGAGCAACGGATACCAAAGGAACCCAATGAG TAGCAGCAGCAGCAGCATGGAACAAGATCACAAGAGCAGCGAGAGCGGGCAGCAAGATGATGAGGTGTCTGCGAGGATTGCGATGCTCCAAGCCAAGGAA GATGAGATCGAGAAGAGGAAAATGGCGGTGAAGGAAAGGGTTGAGCTCCAGCTGGGCCGGGTCGAAGAGGAGACTAGGAAGCTTGTTCGTGTCTGGGAAG AGATCCAAGTGATGGAAGATCCGATGAAGAAAGAGGTGGCTATGCTTCGTAAGAAGGTCGACTTAGCTAATAGAGACGTCAAGGCCTTAGCTCAGAGCTC CCAGAAGAAGGAGAAGGAATATAGAGAAGCATTGGAAGCATTCGATGAGAAGAGCAAAGAAAGGTCTGGTTTGGTAGCTACACTCAAAGAGTTGCTTGCA AGGAGTGAAAGCTTGAGGATGAAGAAACTAGAGGAACTGAGCAAGTTCATTGAACCCACTTAA
AA sequence Show only first row Show all	>Lus10043423 pacid=23168017 polypeptide=Lus10043423 locus=Lus10043423.g ID=Lus10043423.BGIv1.0 annot-version=v1.0 MQQSRVLKQQQEEEKKKKKKKKKAQLGGHMLSWVFPIWYSRMCLAFQALGLNIKKQRSNGYQRNPMSSSSSSMEQDHKSSESGQQDDEVSARIAMLQAKE DEIEKRKMAVKERVELQLGRVEEETRKLVRVWEEIQVMEDPMKKEVAMLRKKVDLANRDVKALAQSSQKKEKEYREALEAFDEKSKERSGLVATLKELLA RSESLRMKKLEELSKFIEPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	0	1
AT2G40820			unknown protein		Lus10027293 [exp]	3.5	0.8471
AT3G50780			unknown protein		Lus10022484 [exp]	3.5	0.8232
AT3G52900			Family of unknown function (DU...		Lus10034160 [exp]	5.1	0.7682
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	5.9	0.8164
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	6.0	0.8001
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	8.0	0.8185
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	9.5	0.7830
AT2G40820			unknown protein		Lus10038998 [exp]	10.1	0.8203
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	11.3	0.7896
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	13.9	0.7698

Compare expression of checked genes

Lus10043423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.