Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36360 625 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G74150 117 / 4e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 105 / 5e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 95 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G27630 89 / 9e-19 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 89 / 2e-18 ACBP4 acyl-CoA binding protein 4 (.1.2) AT4G04670 88 / 3e-18 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G68050 82 / 1e-16 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 76 / 2e-14 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G48180 71 / 2e-13 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034159 [exp] 891 / 0 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10010913 [exp] 124 / 4e-30 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 122 / 8e-30 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 100 / 3e-22 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031497 [exp] 93 / 7e-20 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 93 / 8e-20 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10002756 [exp] 89 / 3e-18 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10037933 [exp] 86 / 9e-18 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029002 [exp] 83 / 1e-16 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024700 [exp] 672 / 0 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G008200 [exp] 141 / 4e-36 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 136 / 2e-34 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 112 / 2e-26 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 108 / 3e-25 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G022000 [exp] 89 / 2e-18 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 86 / 2e-17 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 82 / 3e-16 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G135200 [exp] 82 / 3e-16 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 78 / 5e-15 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10043424 pacid=23168223 polypeptide=Lus10043424 locus=Lus10043424.g ID=Lus10043424.BGIv1.0 annot-version=v1.0 ATGCATTACTGGGTTCGTGCTTCTTCTGCCGATTTCGCCGGCCCTCTTCCACAGCCTCGCAGTGGGCACACGGCTGTTGTCGCTGGCAAATCTAAGGTCG TCGTCTTCGGCGGTCTTGTCGACAAGAGATTCCTTAGCGATATCTACGTCTATGATATTGAAAACAAAATGTGGTTTCAGCCCGACTGCACTGGGAACGG GTCTGATGGGCAAGTTGGTCCATGCCCCCGGGCATTTCATGTAGCTGTAGTCATTGATACTATGATGTTCATATTTGGTGGAAGGTCTGGTGGCAAAAGG CTGGGTGATTTTTGGCTTCTTGATACAGATACATGGCAGTGGTCTGAGCTGGCAAGTTTTGGTGACTTGCCTTCACCTAGGGATTTCGCAGCAGCTTCAG CTGTTGGAAACCAGAAAATTGTTATGTTTGGTGGCTGGGACGGGAAAAAGTGGTTATCGGATGTCTATGTCCTAGACACGATATCACTTGAATGGACAGA GCTGGGAATCACTGGAGCCATCCCTCCTCCCCGATGTGGCCATACAGTTACCATGGTTGAGAAGCGGTTGCTTGTCTATGGTGGCAGAGGTGGTGGTGGT CCAATCATGAGCGATTTATGGGCTCTAAAGGGTCTGATTGATGAAGGTTGGTGTTTCATCCTTTATGTGAATTCTACTTTGGGATGCGCTCAGATTCATG AAGAGAATGAAACACCTGGGTGGACCCAGTTGAAGCTCCCTGGTCAAGCTCCTTCTGCTCGCTGTGGACATACGATTACATCTGGCGGGGTCAATTTGTT GCTTTTTGGAGGACACGGGACTGGTGGCTGGTTGAGTCGTTATGACATCTATTATAATGATTGCATTATCTTGGACAGAGTTTCTGCTCAATGGAAGCGC TTGCCTATTGGCAATGACCCCCCTCCTGCCCGAGCTTACCACACAATGACGTGTGTTGGGCCACGTTATTTGTTATTTGGGGGTTTTGATGGGAAGTTGA CTTTTGGTGATATATGGTGGTTGGTACCAGAAGGGGATTCAATAACCAAGAGACTTGTTGCATCTCCAAGGAAAAATGTGCAGGGAAATATTGGTGCCAG TATGGATAACCAATCAATGCTTAAGGAAAATCAAAGGATTGGATCTGCTATATCAGAATTGCAGAAGAAGCTGCAAGTAACAGTTATGCTTCCTGCATCG GGTCTTCAAATTGTAGATGAGCAGGAAGATAAAGAGCTTCTTGAACTTGCTTCGAGTTTACTTGGCGATAGAGTTTCTCGTATTGAGCAGGAAATTAAGT TTATTCGTGATCGCTGGAAGACATCTTCTCCTAGATCAATTGCTATGAAGGAGATTGGACCATTGCTTCGTGACTACCAACGGCTTATTGCTCGTCGCTT TAGGTGA
AA sequence Show only first row Show all	>Lus10043424 pacid=23168223 polypeptide=Lus10043424 locus=Lus10043424.g ID=Lus10043424.BGIv1.0 annot-version=v1.0 MHYWVRASSADFAGPLPQPRSGHTAVVAGKSKVVVFGGLVDKRFLSDIYVYDIENKMWFQPDCTGNGSDGQVGPCPRAFHVAVVIDTMMFIFGGRSGGKR LGDFWLLDTDTWQWSELASFGDLPSPRDFAAASAVGNQKIVMFGGWDGKKWLSDVYVLDTISLEWTELGITGAIPPPRCGHTVTMVEKRLLVYGGRGGGG PIMSDLWALKGLIDEGWCFILYVNSTLGCAQIHEENETPGWTQLKLPGQAPSARCGHTITSGGVNLLLFGGHGTGGWLSRYDIYYNDCIILDRVSAQWKR LPIGNDPPPARAYHTMTCVGPRYLLFGGFDGKLTFGDIWWLVPEGDSITKRLVASPRKNVQGNIGASMDNQSMLKENQRIGSAISELQKKLQVTVMLPAS GLQIVDEQEDKELLELASSLLGDRVSRIEQEIKFIRDRWKTSSPRSIAMKEIGPLLRDYQRLIARRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	0	1
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	9.4	0.8281
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	9.5	0.8643
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	11.2	0.8584
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	14.2	0.8316
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	15.2	0.8447
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	16.3	0.8050
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	19.2	0.8301
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	19.6	0.8419
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	23.1	0.8336
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	23.5	0.8215

Compare expression of checked genes

Lus10043424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.