Plant FIBer expression Database

Lus10043425 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52240 94 / 1e-19 unknown protein
AT2G37300 41 / 0.0006 ABCI16 ATP-binding cassette I16, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034158
[exp]
1051 / 0 AT3G52240 148 / 3e-37 unknown protein
Lus10009075
[exp]
41 / 0.001 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G025000
[exp]
164 / 8e-43 AT3G52240 198 / 2e-54 unknown protein
Potri.016G082700
[exp]
52 / 1e-06 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
Potri.006G216300
[exp]
45 / 7e-05 AT2G37300 56 / 2e-09 ATP-binding cassette I16, unknown protein
PFAM info
Representative CDS sequence
>Lus10043425 pacid=23168254 polypeptide=Lus10043425 locus=Lus10043425.g ID=Lus10043425.BGIv1.0 annot-version=v1.0
ATGGAGGATTCTTTTGTGACTATAGAGTTCCTTAGAGCACGCTTGCTGTCTGAAAGATCTGTTTCCAAAACAGCTAGACAGAGAGCTGATGAACTAGCAA
AGAGGGTAGAAGAACTGGAAGAACAATTGAGAATTGTCTCAGTTCAACGAATGAAGGCTGAAAAGGCAACAGCAAACGTTCTTACAATTCTGGAGAGCAA
TGGTTTGAGTGATGCCTCCGAGGCATTTGATTCAAGCTCTGACCAGGATGCTGAAAGTGAATATGGCTTGGTGAATGGCTGTCCCAAAGAAGTGGAAAGT
TCTGTTAATTCAAAATCTAGAAAAGGAAAGTCCGAAGAACATTCAGGTTCCGACCTTGATTTTTCCCCTTCTCCAGGCCGAAGCTTGTCCTGGAAGAGTA
GCAAAGATGGTACAAGATCTATCAAAAGATCCAAGGATCCAGCTCCAAGAAGAAGTAGTACATCGTCTAGTTCTTCAACAAAACACCGTGCAGGAAAATC
ATGCCGTCAGATAAGACGTAGAGAAGCCAGAGAACGAGACATGGAAAAGGCCCTTGAACAGCAAGCAGAACTCATAGAAAGATATGATGAGATGGAAAAG
GCTCAAAGAGAATGGGAAGAGAAATTCAGAGAAAATGCCAGCAGTACACCGGATTCTTGTGATCCTGGGAACCGCTCTGACGTTACTGAGGAAGCTCCAT
ATGAGACCAAGGAACAGTCACCCCATACTGTCGGGTCCACGGCCCGGATAGGCAAATCTGAAGTTGAAGAATTACCGAAAATCAAATCCAGCGGTAATCG
TCAGCATGCTGTTGTTGTGAAGCAGGGAATTAGCACACCACCTGCGTCTGGTTCCCCCGGACACGGTTTTCCCTCCTATCAGCAGCTGCAGCCACACAGT
TCAAATGGTTCCCCTGAAAGCCAATCGACTCCCAATTTGCTCTCCGGAAGAGCCGGTGATGTCAACCAGGTTAAAACTTCAGGAAGCCAAACTGAAGTCT
ACGCATTGGTTCCACACCAAGCACCAAAGGAATTGGGGATTCTCGAGGCTCTTAAACTAGCAAAGGAAACACTCCAACAGCAGATAAACAGAAAAATTCC
ATCTGTCGCCAGCAGCCCGGTTGGAACTTCTTATGATCCTTCTTTTCGGATAGCCGGTCCTGGAGATAAGCCAGACATACCAGTTGAATGTCCAGGACTA
TTCAGACCACCAACTGATTTGCCAGCTCGAGTTAACAGTGAAGCAAAGTTTCAACAGCAGATGAACAGCAAGATTCCATCTCTTCTGCCAATAGCATCTG
GCGATAAACCAGAATTATCAGTAGGATGTCCAGGACTTTTCAGACTGCCAACTGATCTCCCATCCCGAGTTAACGGTGAAGCAGCAAGTTTGGGAAATGA
ACTCTTGGGTAGCAGTAGGAGCAATGGCATCAGTTTTAGTCATGCTAGATCGAGTTTGGGGAACCATCATCATCCTAGCCAGACAAATCCAGCAGCATCT
GGAAGCAATCAACTTGTTGCCATGAGGCAGTACTCAGATCCCGTGACAAGCTTCTCGATAGACAACAACCAATTGCTTCCAGGGAAACAAAATCCTGAGG
GTGGTTCTAGATGGCCTACTCGCGGGCATTACATTGATCCTTCATTAGACGTAGGTTTATCTTCGAATGGATCCCCATATCCCGCATTTCCAGCCAGTCC
TGCGTATGGGGATCTGATGTTCCGGATGCCTTCTTCTTCAGAAGGCTTCTCAACGTTTCCTCCCGGTAGAATAACAGATCGAATTCTCACATCTCCGGCC
AGTCCTGCGTATGGTGATGTTATGTCGAGGCAGACGTCTCGTTCGGAAGGATTCTCGACATCTTCGTCAGGTGGGATAACAGATGGGATTCCTCCCACTG
ACCGTTTCTCATTTTCAAGTCCCTATAGATCAGACATATATAGATAG
AA sequence
>Lus10043425 pacid=23168254 polypeptide=Lus10043425 locus=Lus10043425.g ID=Lus10043425.BGIv1.0 annot-version=v1.0
MEDSFVTIEFLRARLLSERSVSKTARQRADELAKRVEELEEQLRIVSVQRMKAEKATANVLTILESNGLSDASEAFDSSSDQDAESEYGLVNGCPKEVES
SVNSKSRKGKSEEHSGSDLDFSPSPGRSLSWKSSKDGTRSIKRSKDPAPRRSSTSSSSSTKHRAGKSCRQIRRREARERDMEKALEQQAELIERYDEMEK
AQREWEEKFRENASSTPDSCDPGNRSDVTEEAPYETKEQSPHTVGSTARIGKSEVEELPKIKSSGNRQHAVVVKQGISTPPASGSPGHGFPSYQQLQPHS
SNGSPESQSTPNLLSGRAGDVNQVKTSGSQTEVYALVPHQAPKELGILEALKLAKETLQQQINRKIPSVASSPVGTSYDPSFRIAGPGDKPDIPVECPGL
FRPPTDLPARVNSEAKFQQQMNSKIPSLLPIASGDKPELSVGCPGLFRLPTDLPSRVNGEAASLGNELLGSSRSNGISFSHARSSLGNHHHPSQTNPAAS
GSNQLVAMRQYSDPVTSFSIDNNQLLPGKQNPEGGSRWPTRGHYIDPSLDVGLSSNGSPYPAFPASPAYGDLMFRMPSSSEGFSTFPPGRITDRILTSPA
SPAYGDVMSRQTSRSEGFSTSSSGGITDGIPPTDRFSFSSPYRSDIYR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52240 unknown protein Lus10043425
[exp]
0 1
AT4G31080 Protein of unknown function (D... Lus10009547
[exp]
3.0 0.8267
AT5G58430 ATEXO70B1 exocyst subunit exo70 family p... Lus10022795
[exp]
4.2 0.7865
AT2G47070 SBP SPL1 squamosa promoter binding prot... Lus10009984
[exp]
7.2 0.7914
AT1G08800 Protein of unknown function, D... Lus10024869
[exp]
12.4 0.7313
AT3G18440 ATALMT9 aluminum-activated malate tran... Lus10027657
[exp]
14.1 0.7453
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Lus10001718
[exp]
14.8 0.7812
AT1G60790 TBL2 TRICHOME BIREFRINGENCE-LIKE 2,... Lus10013035
[exp]
15.2 0.7354
AT1G04990 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10035330
[exp]
17.3 0.7419
AT5G03330 Cysteine proteinases superfami... Lus10023019
[exp]
25.1 0.7102
AT2G27950 Ring/U-Box superfamily protein... Lus10016162
[exp]
25.7 0.7242

Lus10043425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.