Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 677 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 540 / 1e-178 Protein kinase superfamily protein (.1) AT1G73660 345 / 6e-104 protein tyrosine kinase family protein (.1) AT1G18160 344 / 7e-104 Protein kinase superfamily protein (.1) AT5G11850 336 / 7e-102 Protein kinase superfamily protein (.1) AT1G08720 334 / 1e-100 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 315 / 4e-98 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 306 / 3e-92 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06620 307 / 5e-92 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 301 / 1e-89 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034154 [exp] 1142 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 695 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 687 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10028169 [exp] 333 / 1e-103 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10027247 [exp] 338 / 2e-101 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 333 / 6e-101 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 332 / 9e-101 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 332 / 2e-100 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10042868 [exp] 332 / 8e-100 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025800 [exp] 748 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 724 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 714 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 566 / 0 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.006G115800 [exp] 422 / 9e-135 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 380 / 1e-117 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 340 / 7e-102 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 339 / 9e-102 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 335 / 1e-100 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 335 / 1e-100 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10043428 pacid=23168390 polypeptide=Lus10043428 locus=Lus10043428.g ID=Lus10043428.BGIv1.0 annot-version=v1.0 ATGGAGGGGATCAATTCCACGTCAGCAAAAGCGTCGTCGGTGGGGTCCAGCAGCAGCTGTGCGATCTGCCTGGCTGACTACTCCGACGGTCACCTCCTCC GGCTGCTCCCTGGGTGCGGACACTCATTCCACCTGGCCTGTGTGGATCCCTGGCTTATGAAGAGGAAATCTATCACTTGCCCCATCTGCCGGCGCCATTT GCCGCCGGCTGCAGTGGGTAGTAAGAAGCCAGAACCACCTCACAACCTCTTCCCAACCGCCATCAAGCTCTATGTGTTCCGGTCTCTCCATCTTGGGAAC TGGATGATCATGGACTACGGCGGCGAAACGCCTGCTACCACGGCGGCGGCGGCGGCGTCGTCGCTCAGCAAGACCTGGGCTCAACAGACGGAAGAGAGCT ACCAGTTGCAGTTGGCGCTTGCTCTCCGGATGTCTTCCTTCGCCGCTTTAGCTAGTGATCCCAATTCCTTAACTTCTTCTCCTTCATCGGATAATGAACT CCACAAACGCCTCCCACCCATTCCTTCTCCTACGTCGTCTTCTTCTGATTCTGCTCAGCCCATGTCGCATCGCTTCTGGGTAAATGGCTGTTTGTCTTAT TATGATCGAATCCCTGATGGGTTCTATGCAATCTATGGCATGGATGCTTATGTTTGGACGATAAGTACAGACCAGAGAGAGCTGGGTTGGATTCCGTCCT TGGATACGTTAAAAGCTGTTGATCCTCATGTCGAACCTACAATGAAAGTTGTCTTGGTTGATAGATTCAAGGATCCTTATCTCAGAGAGCTTTGCGATAG AGTTGCTAGTCTTTCAAGTAGCACGACGATTGATGCAGTTACTGAGCTTGCCAAATTTGTCTGCAGTCGCATGGGCGGTGAAGCTTTTAGTGAAGATGAA GATTTTTGCAAGTACTGGGTGGAGTGCGCTGACGCCTTGAGGAACCGTCTAGGCTCGGTTATACTTCCAATAGGAAGCTTGGCTGTTGGGCTCTGCATCC ATCGTGCATTGCTTTTTAAAGTGTTGGCAGATTCAATCAACTTACCATGTAGAATTGCTAAAGGTTGCAAATATTGTACACGGGACGTGGCTTCTTGTTG CCTTGTTCAAGTTGGTAACGAGAGGGAATACTTGGTTGATTTGTTCAGGAAGCCGGGGAATTTAAGCCATCCTGATTCCTCACTCAATTGTACATCCTCA ATCTCTGCTTCTTCTCCACTGTCTTACCCGAGGTTCAGTCATGTCCAAACAGCTGAAGATGTCAAGACGATGGCAAAACTTTATTTCTTTGATGGTCAAG CACTAAAGTTCACCTTTGACAATAATACTAACCCAGGTGATTTCCTTGTTTTCTTGAAGGCATATAACTGCACTCATGCCATGAGCCATCTCTCAACCAC TTATAAAAGCTTGGCATCATGCTACAATGTTGCTGGTTCTGTGATAAATGAAGGTAGTTTAGGACAAGGTAAAGACACCAAAAACCTTGTACATGCTGCA AGTAATAATCATGAAGCGTTTCCACCCATCGTTCACAGAGATCCACCTGTCCTCAAGTCCTCCTATGTAACACACTCGGCAAATGCAGACAAACGGCCCG TTCAATCAAGCCACAAATTAAGGACTGGGCATCAGGATGCAAATCCAATTTCTGTCATATCCGATAATACTATGCCTGATACATCTGATCATATATGGTA CTTGGAGAGAAAACCAAAGAATAACTTGAGCAATGACCTTCATCTTGAAGATGAAGATTTGAACATTCAATGGAAAGAACTTCATGTGAAGGAGAAGATC GGTGAAGGTTCATTTGGAACTGTCCATCGTGCTGAATGGCGTGGTTCTGAGGTTGCTGTCAAAATTCTGGCACAACAAGATTTCCATCCACAACACCTCA AAGAGTTTCTCTCTGAGGTTGCAATAATGAAACGACTGCGGCATCCAAACATTGTTCTCTTCATGGGTGCTGTTACCCAACCGCCTCACTTATCAATTGT TACCGAATTCTTATCAAGAGGAAGTTTGCATAAACTGCTGCACAAGCCAGATGCAAGATTAATGCTTGATGAAAGGCGGCGTTTGAGCATGGCTTATGAT GTGGCGATAGGTATGAATTATCTTCATCAGCTGAGACCACCCATTGTCCATCGAGATTTGAAATCTCCAAATCTGTTAGTGGACAGTACATACACTGTAA AGGTTTGCGACTTTGGTCTATCACGTCCTAAAGCGAATACATATCTTTCGTCTAAGACAGCTGCAGGAACACCTGAATGGATGGCACCCGAAGTTCTTCG TAACGAGTCATCAAACGAGAAATCAGATGTTTACAGCTTTGGAGTGATCTTATGGGAACTGGCAACTCTTCAGCAACCTTGGTGGAATCTAAAACAGGCC CAGGTGGTTGAAGCTGTTGGGTTCAAGGGTCAAAAGCTCCAGACTCCAGGCTATGTGAACCCTGCGGTGGCTACCTTAATCGAAGCCTGCTTAACCAATG ACCCTTCGGAACGTCCAGCATTCTCCTACATCGTAGAAACTCTAAAGCTGATAAAAAACTCGGTGTCTCGACCAGCTCGGTGA
AA sequence Show only first row Show all	>Lus10043428 pacid=23168390 polypeptide=Lus10043428 locus=Lus10043428.g ID=Lus10043428.BGIv1.0 annot-version=v1.0 MEGINSTSAKASSVGSSSSCAICLADYSDGHLLRLLPGCGHSFHLACVDPWLMKRKSITCPICRRHLPPAAVGSKKPEPPHNLFPTAIKLYVFRSLHLGN WMIMDYGGETPATTAAAAASSLSKTWAQQTEESYQLQLALALRMSSFAALASDPNSLTSSPSSDNELHKRLPPIPSPTSSSSDSAQPMSHRFWVNGCLSY YDRIPDGFYAIYGMDAYVWTISTDQRELGWIPSLDTLKAVDPHVEPTMKVVLVDRFKDPYLRELCDRVASLSSSTTIDAVTELAKFVCSRMGGEAFSEDE DFCKYWVECADALRNRLGSVILPIGSLAVGLCIHRALLFKVLADSINLPCRIAKGCKYCTRDVASCCLVQVGNEREYLVDLFRKPGNLSHPDSSLNCTSS ISASSPLSYPRFSHVQTAEDVKTMAKLYFFDGQALKFTFDNNTNPGDFLVFLKAYNCTHAMSHLSTTYKSLASCYNVAGSVINEGSLGQGKDTKNLVHAA SNNHEAFPPIVHRDPPVLKSSYVTHSANADKRPVQSSHKLRTGHQDANPISVISDNTMPDTSDHIWYLERKPKNNLSNDLHLEDEDLNIQWKELHVKEKI GEGSFGTVHRAEWRGSEVAVKILAQQDFHPQHLKEFLSEVAIMKRLRHPNIVLFMGAVTQPPHLSIVTEFLSRGSLHKLLHKPDARLMLDERRRLSMAYD VAIGMNYLHQLRPPIVHRDLKSPNLLVDSTYTVKVCDFGLSRPKANTYLSSKTAAGTPEWMAPEVLRNESSNEKSDVYSFGVILWELATLQQPWWNLKQA QVVEAVGFKGQKLQTPGYVNPAVATLIEACLTNDPSERPAFSYIVETLKLIKNSVSRPAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10043428 [exp]	0	1
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	3.5	0.8698
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10035868 [exp]	9.2	0.7960
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	10.3	0.8393
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10019016 [exp]	14.2	0.8143
AT2G46080			unknown protein		Lus10036385 [exp]	15.4	0.8371
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	18.7	0.8281
AT2G27830			unknown protein		Lus10009391 [exp]	22.4	0.7741
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	23.1	0.8358
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	26.5	0.7763
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10018018 [exp]	27.9	0.7896

Compare expression of checked genes

Lus10043428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.