Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10670 427 / 4e-151 ABCI6, ATNAP7 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) AT4G33460 62 / 5e-11 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT5G06530 63 / 8e-11 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G37010 59 / 2e-09 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53270 58 / 4e-09 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT1G02530 58 / 4e-09 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G63270 56 / 7e-09 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT1G10680 57 / 1e-08 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G02520 56 / 2e-08 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G67940 55 / 2e-08 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034152 [exp] 597 / 0 AT3G10670 428 / 2e-151 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Lus10023139 [exp] 68 / 3e-12 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10037981 [exp] 61 / 6e-10 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038714 [exp] 61 / 8e-10 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022564 [exp] 56 / 2e-08 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10016649 [exp] 56 / 2e-08 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10035692 [exp] 56 / 2e-08 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10023199 [exp] 56 / 3e-08 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10037283 [exp] 56 / 3e-08 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012500 [exp] 436 / 2e-154 AT3G10670 446 / 2e-158 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Potri.010G245000 [exp] 74 / 6e-16 AT3G10670 69 / 2e-14 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Potri.002G205500 [exp] 69 / 1e-12 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.010G225200 [exp] 62 / 2e-10 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G074101 [exp] 61 / 5e-10 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G169000 [exp] 60 / 1e-09 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 58 / 4e-09 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.018G110200 [exp] 56 / 4e-09 AT1G63270 387 / 2e-138 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Potri.013G111900 [exp] 58 / 5e-09 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.001G139700 [exp] 57 / 1e-08 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10043429 pacid=23167945 polypeptide=Lus10043429 locus=Lus10043429.g ID=Lus10043429.BGIv1.0 annot-version=v1.0 ATGTCTCAACGTCTTAATTTCGCCTCTCCTTCTCACAGTCAATCACTTATACCTCCGAATCCCTTCACGTCCTCTTCCAAGTCAAATCGGGTTCCCTTCA ATTTCAACTTTCTCCCTCATTTCACCCCTCCTCCTCTTCCATGCTTCACCAGCCGCCGCCTCTCCGTCAGACGTCTTGCGGCGGTGGCAGCTGTCCCCGC TGATGCATCGGAGAAGAAGCCGTTGCTCCAAGTCAAGGATTTGACGGCCGTGATTGCGGAAACGGGACAGGAGATTCTCAAGGGCGTAAATCTGGTTGTT AATGAAGGGGAGGTTCATGCTATAATGGGCAAGAACGGTTCAGGGAAAAGCACATTCTCTAAGGTTCTTGTTGGGCATCCACATTATGAAGTTACTGGTG GTAGCGTGATCTTTAAAGGAGAGAACTTACTTGACATGGAACCAGAGGATAGGTCCCTTGCAGGGCTTTTTATGAGCTTTCAGTCCCCAGTTGAAATCCC TGGTGTCAGCAATAGTGACTTCCTCCACATGGCATACAATGCTCGTAGAAGAAAACTTGGCCTCCCAGAGCTTGATCCACTTCAGTTCTACAGCTATCTG ACTCCCAAGCTTGAGCTTGTGAACATGAAACTAGATTTTCTGAACAGAAATGTGAATGAAGGTTTTAGTGGTGGTGAAAAGAAGCGCAACGAGATTTTGC AGCTCGCGGTCTTGGATGCAAATCTATCCATCCTAGATGAGATTGACTCTGGTCTGGATGTCGATGCCCTCCAGGATGTTGCAAAAGCAGTGAATGGGCT CTTGACTCCAAAGAAGTCTGTTTTGATGGTTACACATTATCGACGCCTTCTGGAATTCATCCATCCTTCATTCGTCCATATCATGGAGGATGGGAGAATT ATAAAGACAGGGGATATAAACATAGTGACACTTCTTGAGAAGGAAGGTTACAAAGCCATGTCAACCTCCTAA
AA sequence Show only first row Show all	>Lus10043429 pacid=23167945 polypeptide=Lus10043429 locus=Lus10043429.g ID=Lus10043429.BGIv1.0 annot-version=v1.0 MSQRLNFASPSHSQSLIPPNPFTSSSKSNRVPFNFNFLPHFTPPPLPCFTSRRLSVRRLAAVAAVPADASEKKPLLQVKDLTAVIAETGQEILKGVNLVV NEGEVHAIMGKNGSGKSTFSKVLVGHPHYEVTGGSVIFKGENLLDMEPEDRSLAGLFMSFQSPVEIPGVSNSDFLHMAYNARRRKLGLPELDPLQFYSYL TPKLELVNMKLDFLNRNVNEGFSGGEKKRNEILQLAVLDANLSILDEIDSGLDVDALQDVAKAVNGLLTPKKSVLMVTHYRRLLEFIHPSFVHIMEDGRI IKTGDINIVTLLEKEGYKAMSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10043429 [exp]	0	1
AT2G41950			unknown protein		Lus10016243 [exp]	6.2	0.8180
AT4G14000			Putative methyltransferase fam...		Lus10023222 [exp]	7.9	0.6748
AT1G26180			unknown protein		Lus10031917 [exp]	12.6	0.7509
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	14.1	0.7557
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	14.4	0.7860
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	14.5	0.7543
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	17.1	0.7304
AT3G11500			Small nuclear ribonucleoprotei...		Lus10021342 [exp]	23.6	0.7744
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	24.7	0.7473
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	26.4	0.7640

Compare expression of checked genes

Lus10043429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.