Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27510 174 / 2e-56 ATFD3 ferredoxin 3 (.1) AT1G60950 144 / 1e-44 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT5G10000 141 / 2e-43 ATFD4 ferredoxin 4 (.1) AT1G10960 132 / 4e-40 ATFD1 ferredoxin 1 (.1) AT4G14890 84 / 4e-21 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G32550 79 / 8e-19 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034144 [exp] 271 / 9e-95 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10020616 [exp] 167 / 6e-54 AT2G27510 172 / 9e-56 ferredoxin 3 (.1) Lus10004870 [exp] 166 / 2e-53 AT2G27510 165 / 5e-53 ferredoxin 3 (.1) Lus10001369 [exp] 134 / 7e-41 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10015462 [exp] 132 / 5e-40 AT1G60950 182 / 8e-60 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10006116 [exp] 83 / 9e-21 AT4G14890 186 / 1e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10010557 [exp] 84 / 4e-20 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10000483 [exp] 77 / 5e-18 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10004576 [exp] 76 / 2e-17 AT1G32550 248 / 6e-85 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G239100 [exp] 201 / 6e-67 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.008G020100 [exp] 200 / 9e-67 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.009G163800 [exp] 179 / 2e-58 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.004G202500 [exp] 179 / 5e-58 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.003G015200 [exp] 141 / 1e-43 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.004G218400 [exp] 136 / 9e-42 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.001G470700 [exp] 132 / 6e-40 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.010G087300 [exp] 82 / 2e-20 AT4G14890 189 / 7e-63 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.008G153200 [exp] 82 / 3e-20 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G090400 [exp] 76 / 2e-17 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10043430 pacid=23168295 polypeptide=Lus10043430 locus=Lus10043430.g ID=Lus10043430.BGIv1.0 annot-version=v1.0 ATGTCGACAGTAAAGCTTCCACTCTCCTGCATGATCCAAGCTGCACCTGTTTCCAAAGGTACGGTACAAAGCAGACCCCAGCTGGCATTGGCAAACGCCC CGAATTCGTTTGGTTCTTCTTCGAAGAAAAACATATCAGGGGGAATAGTTGGTTTCAAGTCGAGATCATCATCGTTGAGCGTAGCTTGTGCAACGACAGT ATACAAGGTGAAACTGGTTGGACCAGATGGGGAGGAGCACGAGTTCGAAGCTCCCGACGATACGTATATCCTGGATGCAGCTGAAAATGCAGGAGTGGAC CTTCCCTACTCGTGCAGGGCTGGTGCTTGCTCTACTTGCGCAGGACAGTTGGTGTCAGGGTCAGTGGACCAATCAGACGGCTCGTTCCTTGACGATAAGC AGATTAAGAAAGGGTATGTCCTCACCTGCATCGCGTATCCCACAGCCGATTGTGTGATCCATACCCATAAGGAGTCTGATCTTTACTAA
AA sequence Show only first row Show all	>Lus10043430 pacid=23168295 polypeptide=Lus10043430 locus=Lus10043430.g ID=Lus10043430.BGIv1.0 annot-version=v1.0 MSTVKLPLSCMIQAAPVSKGTVQSRPQLALANAPNSFGSSSKKNISGGIVGFKSRSSSLSVACATTVYKVKLVGPDGEEHEFEAPDDTYILDAAENAGVD LPYSCRAGACSTCAGQLVSGSVDQSDGSFLDDKQIKKGYVLTCIAYPTADCVIHTHKESDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10043430 [exp]	0	1
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	7.9	0.7916
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	9.1	0.7892
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	24.5	0.7552
AT2G44200			CBF1-interacting co-repressor ...		Lus10039128 [exp]	26.5	0.7341
					Lus10031757 [exp]	27.5	0.7356
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	30.9	0.7658
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	31.5	0.7607
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	31.6	0.7430
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	33.0	0.7529
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030470 [exp]	42.8	0.7258

Compare expression of checked genes

Lus10043430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.