Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54300 324 / 1e-110 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G44050 260 / 2e-85 COS1 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) AT1G04760 240 / 7e-78 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 237 / 1e-75 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04750 234 / 1e-75 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 233 / 4e-75 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 197 / 2e-61 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 186 / 9e-57 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT4G32150 133 / 1e-36 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G11150 133 / 1e-36 ATVAMP713 vesicle-associated membrane protein 713 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034145 [exp] 364 / 4e-123 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10028541 [exp] 282 / 7e-94 AT2G44050 288 / 2e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10018133 [exp] 280 / 3e-93 AT2G44050 289 / 1e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10036203 [exp] 241 / 3e-78 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 240 / 8e-78 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 239 / 2e-77 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 239 / 3e-77 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 239 / 3e-77 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 239 / 3e-77 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019400 [exp] 333 / 8e-114 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 321 / 3e-109 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.017G001800 [exp] 270 / 1e-89 AT2G44050 291 / 1e-100 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.007G146000 [exp] 265 / 2e-87 AT2G44050 279 / 6e-96 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.003G177700 [exp] 241 / 4e-78 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 240 / 9e-78 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 240 / 1e-77 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 238 / 4e-77 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 228 / 5e-73 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 197 / 3e-61 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin CL0445 [flax] [poplar] PF00885 [flax] [poplar] DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase
Representative CDS sequence Show only first row Show all	>Lus10043431 pacid=23168225 polypeptide=Lus10043431 locus=Lus10043431.g ID=Lus10043431.BGIv1.0 annot-version=v1.0 ATGTCTGGTAGGGGATTGATATATAGCTTTGTGGCAAGGGGGACTGTTGTGTTGGCAGAGCACACATCTTACTCGGGGAACTTCAGCACCGTAGCTGTTC AGTGCTTACAGAAACTTCCTCCCAATAGCAGCAAGTACACTTACTCATGTGATGGCCACACCTTTAACTTCCTCAAAGACGATGCCTTTGTCTTCCTTGT TGTTGCGGATGAGACCGTGGGAAGGGCGGTGCCCTTTGTGTTTCTTGAGCGCGTGAAGGACGACTTCAAACAACGTTACGCGACGAATATTAAAAAGGAG GAACACCCTCTTGTTGATGACGATGATGATGACTTGTTTGAAGATCGGTTTAGCATTGCTTACAATCTTGATAGAGACTTTGGGCCAAAGCTTAAAGAGC ATATGCAGTACTGTATGGAACATCCCGAGGAGATTAGTAAGCTGTCCAAATTGAAGGCTCAAGTCACCGAAGTCAAGGGAATTATGATGGACAACATCGA GAAGGTTTTGGATCGTGGGGAGAAGATAGAACTTCTGGTTGATAAAACAGAGAATCTACAGTTTCAGATAACAATGGCCTCTTCTTCTCTGCTAACATCA GCTCCATCTACTAAGCAGTATTTGAACATATCATCCTCCTCCTCCTCTCTTTCTCTTCTCCACAAACCATCCCACCTCTCCTTCTCCAACATCTCTTCTT CTTCCTCTGCCATCGGGTTTAGGAATGCTCCTCCCACTCTTACTAGTACTACTTCCAGGCGCGCACCGGAAGCAGTTCGGCATCTTACTGGCTCGGTCTT ACAACCTGACGGCCTCCGTTTTGCTTTGGTTGTTGCCCGGTTCAATGAGATCGTGACTAGGGCGCTTTGGGAAGGAGCTATCGACACTTTCGGAAGGTAT TCCGTCCCGGAAGAGAATATTGATGTTGTGTGGGTTCCTGGTTGTTTCGAAGTAGGGTTGGCCGCAGATAAGCTAGGCAAGTCAGGCAAGTACAATGCAG TGGTGTGCATTGCAGCTGTGGTAAGAGGCGACACCTCTCACTACGATGCAGTTGCAAACTCGGCTGCATCCGGAGTCCTCTCAGCTGGTCTGAATTCAGG AGTCCCGTGTATATTCGGTGTTCTTACCTGTGATAACATGGACCAGGCTATTAATCGTGCCGGAGGGAAGGTTGGGAACAAAGGTTCGGAAGCTGCATTG ACTGCTCTAGAGATGGCATCTCTGTTTGAGCATCATTTGAAGTAA
AA sequence Show only first row Show all	>Lus10043431 pacid=23168225 polypeptide=Lus10043431 locus=Lus10043431.g ID=Lus10043431.BGIv1.0 annot-version=v1.0 MSGRGLIYSFVARGTVVLAEHTSYSGNFSTVAVQCLQKLPPNSSKYTYSCDGHTFNFLKDDAFVFLVVADETVGRAVPFVFLERVKDDFKQRYATNIKKE EHPLVDDDDDDLFEDRFSIAYNLDRDFGPKLKEHMQYCMEHPEEISKLSKLKAQVTEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQITMASSSLLTS APSTKQYLNISSSSSSLSLLHKPSHLSFSNISSSSSAIGFRNAPPTLTSTTSRRAPEAVRHLTGSVLQPDGLRFALVVARFNEIVTRALWEGAIDTFGRY SVPEENIDVVWVPGCFEVGLAADKLGKSGKYNAVVCIAAVVRGDTSHYDAVANSAASGVLSAGLNSGVPCIFGVLTCDNMDQAINRAGGKVGNKGSEAAL TALEMASLFEHHLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	0	1
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	5.8	0.8333
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10016573 [exp]	6.5	0.8242
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	7.2	0.8364
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	10.4	0.8212
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	17.6	0.7579
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	21.5	0.8035
AT5G01970			unknown protein		Lus10031947 [exp]	23.9	0.8088
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	24.4	0.8071
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	27.7	0.7952
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	33.6	0.8098

Compare expression of checked genes

Lus10043431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.