Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03540 981 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 920 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G52350 566 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT5G50380 352 / 5e-112 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 342 / 1e-108 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 341 / 1e-108 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 322 / 3e-101 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 319 / 3e-100 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13150 278 / 2e-84 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 271 / 3e-81 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034151 [exp] 1253 / 0 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 888 / 0 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10008126 [exp] 360 / 2e-115 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 355 / 1e-113 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10013163 [exp] 338 / 8e-110 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 343 / 2e-109 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10015757 [exp] 268 / 1e-80 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10005436 [exp] 265 / 3e-79 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10041536 [exp] 265 / 2e-78 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017800 [exp] 1079 / 0 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 1070 / 0 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 952 / 0 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.016G071000 [exp] 948 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.001G166400 [exp] 361 / 3e-116 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 356 / 3e-114 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 353 / 8e-113 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 346 / 4e-110 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.019G124000 [exp] 322 / 5e-101 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 315 / 2e-98 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10043432 pacid=23168191 polypeptide=Lus10043432 locus=Lus10043432.g ID=Lus10043432.BGIv1.0 annot-version=v1.0 ATGGCAGGTGTAGCAATGGCTGGCGGCGTCGATTCGCTTAGTGACAGAGCCGCCAAGATGAAGGAAGCTCTCCTCAAGAGCCAGACAATCTCCGAGAACG TCGTCTCTATTCTGGGTTCTTTCGACAGTCGCCTCTCTGTTCTCGAGGCTGCCATGCGTCCCACTCAGATTAGGACACATGCTATTCGGAAGGCTCATGA GAATATAGACAAGACTCTCAAAGCTGCGGAGGTTATATTGGCTGAATTCGACATTTCTCGAGAGGCAGAGGCAAAAATACTTAGGGGACCACATGAGGAC CTAGAAAGTTATTTGGAAGCCATCGAGCAGCTGAGAAAGCATATACGTTTCTTCAGCAGTAACAAAGGTTTTAAGACTGGCGATGCAGTGCTTAATAATG CAAATAGCTTACTTGCTAAAGCCATATTAAAGCTAGAAGATGAATTTAAGCAGCTGCTAGCGTCTTACAGCAAACCTGTGGAGCCTGACCGTCTTTTTGA GTGCCTTCCCGAATCAATGCGACCTTCTGCTGGATCCCCTGCAAACCATGGCGATCCTAATGGCTTAGCTCCTTCTTCCCACGGTCATTCTGAGCATAGT AATGCAGAGGCTGCTAGCTTTAAACCCCTTGTTCTGATACCGCCGAGAACTGTACCTTTATTGCATGATCTTTCCATACATATGGTCCAAGCTGGGCACC AACAGCAATTGCTAAAGATTTACAGGGATACACGGTCATCAGTTCTCGAAGAAAGCCTTCGTAAATTGGGAGTTGAAAGACTGAGTAAAGAAGATATTCA AAAGATGCAATGGGAGGTCTTGGAAGCAAAGATTGGGAATTGGATTCACTTCATGCGAATTGCAGTCAAGGTCTTGTTTGCTGGAGAAAGAAGACTTTGT GATCAAATCTTTGATGGGTTTGAATCTCTGCGAGATCAATGTTTTGCCGAATGCACGGGCAATAATGTCTCAATGCTTCTCAGTTTTGGAGAAGCCATAA CCAAAAGCAAGAGATCACCAGAAAAATTATTTGTTCTTCTTGACATGTATGAGATAATGCGAGAACTTCATTCAGAGATTGAAACAGTTTTCAGTGGTAA AGTTTGTGCGGAAATTAGGGAATCAACATTTGGTTTGAGCAAGAGGCTTGCCCAGACAGCTCAAGAAACTTTTGGTGATTTCGAAGAAGCAGTTGAAAAG GATGCAACTAAAACAGCTGTGTTGGATGGAACTGTTCATCCCCTAACGAGTTACGTCATCAACTATGTGAAGTTTCTATTTGACTACCAATCAACATTGA ACCAACTCTTTCAAGAATTTGAAACTGGAGGGGAGACGACTTCACAGTTAGCTACTGTGACAATGCGAATAATGCAGGCTCTTCAGACCAATTTGGATGG AAAATCTAAGCAGTATAAAGATCAAGCTTTGACACACTTATTTCTGATGAACAATATTCACTACATGGTCAGATCTGTCCGCAGATCTGAAGCCAAGGAC CTGTTGGGAGATGATTGGGTACAACGACACAGAAGAGTTGTGCAGCTGCATGCAAACCAATACAAAAGGATTGCTTTGGGAAAGCTTCTCCAATGCCTCT CTGCCCAAGGCCTAACTTCATCAGGAGGAAGTTCTACAGGACCCGGCGAGGGAGGAAGTGGCAGCGGAGCTTCAAGGGGATTGGTTAAAGAGAGGTTCAA GATCTTCAATGTTCAATTTGAGGACCTCCACCAGAAACAATCTCAGTGGACAGTACCCGACACCGAGCTGCGGGAATCTCTTAGGCTCGCAGTTGCAGAG CTCTTGTTACCTGCCTACAGATCTTTTGTAAAACGTTTCGGGCCACTAGTTGAGAGCGGGAAGAACCCGCAGAAGTACATAAAGTACTCAGCTGAGGACC TGGAGAGAATGCTGGGCGAATTTTTCGAAGGCAAGACCCTGAACGAGCCAAGACGGTAG
AA sequence Show only first row Show all	>Lus10043432 pacid=23168191 polypeptide=Lus10043432 locus=Lus10043432.g ID=Lus10043432.BGIv1.0 annot-version=v1.0 MAGVAMAGGVDSLSDRAAKMKEALLKSQTISENVVSILGSFDSRLSVLEAAMRPTQIRTHAIRKAHENIDKTLKAAEVILAEFDISREAEAKILRGPHED LESYLEAIEQLRKHIRFFSSNKGFKTGDAVLNNANSLLAKAILKLEDEFKQLLASYSKPVEPDRLFECLPESMRPSAGSPANHGDPNGLAPSSHGHSEHS NAEAASFKPLVLIPPRTVPLLHDLSIHMVQAGHQQQLLKIYRDTRSSVLEESLRKLGVERLSKEDIQKMQWEVLEAKIGNWIHFMRIAVKVLFAGERRLC DQIFDGFESLRDQCFAECTGNNVSMLLSFGEAITKSKRSPEKLFVLLDMYEIMRELHSEIETVFSGKVCAEIRESTFGLSKRLAQTAQETFGDFEEAVEK DATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLNQLFQEFETGGETTSQLATVTMRIMQALQTNLDGKSKQYKDQALTHLFLMNNIHYMVRSVRRSEAKD LLGDDWVQRHRRVVQLHANQYKRIALGKLLQCLSAQGLTSSGGSSTGPGEGGSGSGASRGLVKERFKIFNVQFEDLHQKQSQWTVPDTELRESLRLAVAE LLLPAYRSFVKRFGPLVESGKNPQKYIKYSAEDLERMLGEFFEGKTLNEPRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	0	1
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	1.4	0.8953
AT2G32240			unknown protein		Lus10003812 [exp]	1.4	0.8942
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	1.7	0.8805
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	5.3	0.8286
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	6.0	0.8618
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10029991 [exp]	9.5	0.8171
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10014907 [exp]	10.7	0.7975
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	11.5	0.7921
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	12.4	0.8095
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	12.7	0.8238

Compare expression of checked genes

Lus10043432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.