Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 123 / 9e-34 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 76 / 6e-16 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 71 / 5e-14 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT4G14860 58 / 4e-10 OFP ATOFP11 ovate family protein 11 (.1) AT1G05420 56 / 3e-09 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT1G79960 56 / 8e-09 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT3G52525 52 / 5e-08 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G32100 52 / 7e-08 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT5G22240 52 / 8e-08 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT5G19650 49 / 9e-07 OFP ATOFP8, OFP8 ovate family protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034150 [exp] 301 / 6e-103 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 90 / 2e-20 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10016979 [exp] 84 / 1e-18 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043406 [exp] 72 / 3e-15 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10006912 [exp] 60 / 1e-10 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10035891 [exp] 60 / 4e-10 AT1G79960 166 / 2e-48 ovate family protein 14 (.1) Lus10014677 [exp] 58 / 8e-10 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10010554 [exp] 54 / 2e-08 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 53 / 1e-07 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017500 [exp] 140 / 8e-41 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 137 / 1e-39 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 114 / 4e-30 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 105 / 6e-27 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.005G211300 [exp] 77 / 2e-16 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.009G161600 [exp] 76 / 2e-16 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.002G051200 [exp] 75 / 1e-15 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 66 / 2e-12 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.010G087200 [exp] 64 / 7e-12 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.008G153500 [exp] 63 / 1e-11 AT4G14860 103 / 1e-27 ovate family protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10043433 pacid=23168398 polypeptide=Lus10043433 locus=Lus10043433.g ID=Lus10043433.BGIv1.0 annot-version=v1.0 ATGAAGATCCCTTCATTCCTCAAGTCCACTGCCGCAGCCACCACAGTTCCTCCTCCTCCTCCTCCTCCTAAAGAAATCTCAGTCAACGCTGTCGTCGGAC GTCAATGGAGGAAATGGCCGTCTTGCAACTACCCTGACACCCTCTCTTTCAGATCCCCTTCTTCTTCCTTCGACGGTATCTTCAAAACCCTCAACTCCAT CTACTTCCATGACGTCGACCATGGATTACTAGCTACAGAGGATGTCCCAGATTTCGTGGCGAGTGATGAAATCTTATTCTCTGCCGATTCCGATTCGGAA GATGATTCCGAGACTGTGGTCCGCGGAATCAGGTCCTCTGACCGATTGTTCTTCGACCCGGACCAAATCAGCTCGGCGATTTTGCTGCGGAAAACAGAGG AGGAGGCGCCGGAGGCAGAGGAAGAGGCGGATAAGGCGCCGCCGCCGCCGCCGACGAAAGGGTTTCCGTTCGAAGAGAGCGTGGTGCTGGCCATGGAGTC GGAGGATCCATACCTGGACTTCAGGAGATCGATGGAAGAGATGGTTGAATTTCAGGGGATTGATTGTTGTAAAGATTGGGGCCGACTGGAGGAGCTCCTG CAGTGGTATTTGAATGTCAACGGCAAGAAGAATCACGGGTTTATCGTCGGTGCGTTTTTGGATTTGTTGGTCGGGATCTCTGGCGGAGGGGGCGGCGGCG TCTGTGCCCCGACGAGTGGGTGTGATTCGTTTTCGTCTGCGGTCACTTGTCTATCTCCTTCTCGCGATTCTTGCTCTACTACTACCAATTCTGATTCTTC TTCTCCCTTATTTTACCCAAGAGGATGA
AA sequence Show only first row Show all	>Lus10043433 pacid=23168398 polypeptide=Lus10043433 locus=Lus10043433.g ID=Lus10043433.BGIv1.0 annot-version=v1.0 MKIPSFLKSTAAATTVPPPPPPPKEISVNAVVGRQWRKWPSCNYPDTLSFRSPSSSFDGIFKTLNSIYFHDVDHGLLATEDVPDFVASDEILFSADSDSE DDSETVVRGIRSSDRLFFDPDQISSAILLRKTEEEAPEAEEEADKAPPPPPTKGFPFEESVVLAMESEDPYLDFRRSMEEMVEFQGIDCCKDWGRLEELL QWYLNVNGKKNHGFIVGAFLDLLVGISGGGGGGVCAPTSGCDSFSSAVTCLSPSRDSCSTTTNSDSSSPLFYPRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043433 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	3.5	0.9369
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	8.0	0.9094
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	14.0	0.8984
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	14.1	0.8689
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	14.7	0.9043
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10026398 [exp]	14.8	0.8670
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	18.4	0.9147
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	19.9	0.8920
					Lus10020564 [exp]	22.0	0.9130
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	23.5	0.8615

Compare expression of checked genes

Lus10043433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.