Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 1080 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 225 / 3e-63 RPF2 rna processing factor 2 (.1) AT5G39710 224 / 6e-62 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 219 / 2e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 215 / 6e-60 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62930 216 / 7e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 213 / 3e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 213 / 6e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 213 / 7e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 211 / 3e-58 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034149 [exp] 1432 / 0 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008969 [exp] 1038 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 719 / 0 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028851 [exp] 341 / 2e-109 AT5G04810 312 / 3e-98 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019524 [exp] 226 / 6e-62 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 223 / 9e-62 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 226 / 8e-61 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 224 / 1e-60 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 218 / 1e-59 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 1179 / 0 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 1167 / 0 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G050400 [exp] 229 / 9e-65 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 230 / 2e-64 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 234 / 5e-64 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 227 / 5e-64 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 226 / 1e-63 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 222 / 3e-62 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G139300 [exp] 223 / 2e-61 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 220 / 2e-61 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043434 pacid=23168088 polypeptide=Lus10043434 locus=Lus10043434.g ID=Lus10043434.BGIv1.0 annot-version=v1.0 ATGGATATCCTTTCCCTCTCCGCCGCTACATCACTCTCCTTCTCCACCGTCGCCGGCAAAAGACCTCCCTATCTACTTACTCCTACTTCCGCCTCTCTCT CCCCCAACCCACCCCCAACTCCTCCGCCGTCCCAATCACCCAACCCAAATGCCTCCTCTTCCGTCCGTCGGCCTAACTTACTCAGTCAGCCATCACCATC CACTTCCGATGACACACCTCCGACCCCCAAAAACCCTTTCAAAACCCTATTGCAATCTTCCCGCACTTCGTCTCCGTCTCCAACCATTGCTTCTCCCGCT TCCAACCCTTTCTGGACGTCCAGCAAGCTCTCTTCTTCTCTTCCTCCGCCGCCTCCTGCCCCGAAAACACGGTCCCGAATTTCAGAAACTGATGTCCCAG AAGCTGAATTCCGCGAGCCGGGGAAGATATTCGTCGGGAACCTTCCCAACTGGGTTAAGAAGCACGAATTGGTTGAGTTTTTCAGGCAATTCGGGCCGAT TAAGAGCGTAATCCTTATCAAAAGTCACAATGAGACGGAGAGGAACGCGGGGTTTTGTTTTGTTATTTACGACGGCTCCACGGCGGAGACTTCCGCCCTG AACGCCGTGGAGTATGACGGGATGGATTTCCACGGCAGGGTTCTGACGGTGAAATTGGACAATGGGAGGAGACTGAAAGCCAAAGCCTTGGAAAGAAAGC GGTGGGTGGGAGGTAAAGGCGGGGAGGAGGAGTTCAAGTCCAAGTGGCATGAGGAGAGGGAAGGTTCCAGGATGGCGTTTCGGAGGGTTCTGGACACGCA GCCTGAGAATTGGCAAGCTGTTGTTGATGCATTTGATAAAGTTAATAAGCCTTCTAGAAGGGAGTTTGGATTGATGGTGGGCTATTATGCTAGGCGAGGA GATATGCACCGTGCAAGGCTCACTTTTGAAACGATGCGTGCCAGAGGAATAGAACCCAGCTCTCATCTCTACACTAGCCTTATACATGCTTATGCAGTTG GTAGAGACATGGAAGAAGCACTTTCTTGTGTCAGGAAAATGAAGGAAGAGGGCGTCGAGTTGACTCTGGTTACTTACAGCATTCTTGTCTCCGGATTCGC CAAAATGGGCAATGCAGATCAAACACATAACATGGATAAAGCTGAAGCATTAGTGAGGGATATGGAAGAAGAAGGTATAGATGCTACCATTGACATATAC CATACCATGATGGACGGGTATACTATGATTGGCAACGAAGAGAAATGCCTTGTTGTATTTCAAAGACTTAAGGGGGGCAAAGTTTCAAAAGCGGTTGAAG TTTGCAAATTGATGGAACATGATGGCATAAGACATAACATGAAGACTTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGATTGGGAAAATGCATT TGCAGTTTTCGAGGATGTTGTTAAAGATGGTATGAAACCTGATGTGGTGCTCTATAATAGCATCATCAAAGCGTTTTGTTGTATGGGAAACATGGATCGT GCCATTGGGATGGTCAATCAGATGCAGAAGGAAAGGCATAGACCCACCACACGTACATTTATGCCCATCATTCATGCATTTGCAAGAGCTGGAGACATGA CAAGAGCGCTGGAGACCTTTGATATGATGAGGCGGAGTGGTTGCTTCCCGTCAGTGCACACTTTTAACGCGTTGATTCTCGGTCTCGTTGAGAAGCGTGA GATGGAGAAGGCAGTTGGAATATTGGATGAGATGGCACTAGCAGGTGTTACTCCAAATGAACATACATACACAACAATTATGCATGGTTTTGCTGCGCTA GGTGACACCGGTAAAGCTTTCGAGTACTTCACCAAACTGAGAAACGAAGGACTTGATCTTGATGTGTTCACGTACGAGGCATTGTTGAAGGCATGCTGCA AGTCGGGGAGGATGCAAAGTGCTTTAGCAGTGACTAAAGAAATGAGTGCCCGAAAAATCCTCAGAAACAAATTCGTCTATAACATATTAATTGATGGATG GGCTCGAAAGGGCGATGTATGGGAGGCAGCTGACCTTATGCAACAAATGAAGAAAGAAGGAGTTCAACCTGACATCCACACTTATACTTCCTTTATAAAG GCTTCCTGCAAAGCTGGAGATATGGAAAGAGCAACGAAGACCATGGAGGAAATGGCAGCGTGTGGAGTGAAGCCAAATGTGAAAACATACACTACCTTGA TCTATGGCTGGGCTCGAGCATCACTCCCCGAGAAGGCACTGAGATGCTTCGAAGAAATGAAGTCTCGGGGACTAAAGCCAGACAAGGCGGTGTACCATTG CTTGATGACGTCCCTTCTGTCTCGGGCTACCGTGGCCGAGGCATACATTTACTCAGGAATCCAGTCAGTCTGCAAAGAGATGGCGGAATGTGAGCTGACA TTTGATATGGGTACGGCTGTGCATTGGTCGAAACGTTTGCGGAAGATTGAGAGAAGCGGTGGAGAGATCACAGAAGCTCTGCAGAAAACCTTCCCTCCTG AATGGAGTGCAAGCCATGTTCCCATCTCGGATTCGGATTCGGATGATGAACTCAACATTGAGAGTGACGATGATGATGATGATGATAGCTTTTACTTGGC AGATGCAGACGATGGTGACGAGGACGGCAATGAAGGTGAAGTGAAAGAGTCTGATGGTCGTGGTCTAAGACGAAGAATGCTCGGCGACAGAAGCTTCCAA TTGTAG
AA sequence Show only first row Show all	>Lus10043434 pacid=23168088 polypeptide=Lus10043434 locus=Lus10043434.g ID=Lus10043434.BGIv1.0 annot-version=v1.0 MDILSLSAATSLSFSTVAGKRPPYLLTPTSASLSPNPPPTPPPSQSPNPNASSSVRRPNLLSQPSPSTSDDTPPTPKNPFKTLLQSSRTSSPSPTIASPA SNPFWTSSKLSSSLPPPPPAPKTRSRISETDVPEAEFREPGKIFVGNLPNWVKKHELVEFFRQFGPIKSVILIKSHNETERNAGFCFVIYDGSTAETSAL NAVEYDGMDFHGRVLTVKLDNGRRLKAKALERKRWVGGKGGEEEFKSKWHEEREGSRMAFRRVLDTQPENWQAVVDAFDKVNKPSRREFGLMVGYYARRG DMHRARLTFETMRARGIEPSSHLYTSLIHAYAVGRDMEEALSCVRKMKEEGVELTLVTYSILVSGFAKMGNADQTHNMDKAEALVRDMEEEGIDATIDIY HTMMDGYTMIGNEEKCLVVFQRLKGGKVSKAVEVCKLMEHDGIRHNMKTYSMLINGFLKLKDWENAFAVFEDVVKDGMKPDVVLYNSIIKAFCCMGNMDR AIGMVNQMQKERHRPTTRTFMPIIHAFARAGDMTRALETFDMMRRSGCFPSVHTFNALILGLVEKREMEKAVGILDEMALAGVTPNEHTYTTIMHGFAAL GDTGKAFEYFTKLRNEGLDLDVFTYEALLKACCKSGRMQSALAVTKEMSARKILRNKFVYNILIDGWARKGDVWEAADLMQQMKKEGVQPDIHTYTSFIK ASCKAGDMERATKTMEEMAACGVKPNVKTYTTLIYGWARASLPEKALRCFEEMKSRGLKPDKAVYHCLMTSLLSRATVAEAYIYSGIQSVCKEMAECELT FDMGTAVHWSKRLRKIERSGGEITEALQKTFPPEWSASHVPISDSDSDDELNIESDDDDDDDSFYLADADDGDEDGNEGEVKESDGRGLRRRMLGDRSFQ L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	0	1
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	1.7	0.9371
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	2.4	0.9261
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	2.8	0.9242
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	3.0	0.9121
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	3.2	0.9234
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	3.5	0.9301
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	9.4	0.9153
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	10.6	0.8911
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	12.2	0.8833
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	12.8	0.9086

Compare expression of checked genes

Lus10043434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.