Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 425 / 2e-146 Protein kinase superfamily protein (.1) AT5G40030 210 / 3e-62 Protein kinase superfamily protein (.1) AT3G12690 209 / 3e-61 AGC1.5 AGC kinase 1.5 (.1.2.3) AT2G34650 202 / 3e-60 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G55910 200 / 1e-58 D6PK D6 protein kinase (.1) AT5G47750 202 / 2e-58 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 201 / 2e-58 AGC1.7 AGC kinase 1.7 (.1.2) AT4G26610 200 / 2e-58 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT1G16440 197 / 2e-57 RSH3 root hair specific 3 (.1) AT2G44830 197 / 8e-56 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006272 [exp] 451 / 3e-156 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 451 / 3e-156 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 205 / 5e-60 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 205 / 7e-60 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 202 / 4e-59 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10036150 [exp] 199 / 4e-59 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10001840 [exp] 202 / 7e-59 AT1G79250 657 / 0.0 AGC kinase 1.7 (.1.2) Lus10016629 [exp] 201 / 5e-58 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 201 / 5e-58 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024000 [exp] 523 / 0 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.010G236200 [exp] 520 / 0 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 457 / 3e-159 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186200 [exp] 454 / 3e-158 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.015G093400 [exp] 342 / 2e-113 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 228 / 1e-69 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.017G075400 [exp] 210 / 3e-62 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 204 / 2e-59 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G003800 [exp] 204 / 3e-59 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.010G175900 [exp] 202 / 1e-58 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043435 pacid=23168153 polypeptide=Lus10043435 locus=Lus10043435.g ID=Lus10043435.BGIv1.0 annot-version=v1.0 ATGGATCATCCAGAGATTCCAGACATGGCCGTCGACGATATGGATCACATGAGCTTCCCATCCACCCCAACCTCCCTTTCCAACACCACCACTCCGGGCG GGGCCAGCCCGGTCTTATCACCCGGGTTGTCCCGGCCCCACCGCCTCCCTCCCTGCCAAGTGTGCCGGCGGATCATGCAATCTCAGTTCAGCCTGCCGGA GCTCCGCTTCATGCACCGGGTTGGGAGCGGCGACATAGGGAGCGTCTACTTGGTTCAGTTGAGGGAAGGCGACGGCTGCGTGTTCGCCGCCAAAGTTATG GACAAGAAGGAGATGTCAAGCCGCAACAAGGACAGCCGCGCGAGGATCGAGAGGGAGATTCTAGAAGTTCTGGACCACCCCTTTTTGCCGGCGCTGTACG CCACCGTGGAGTCCAGTGGGTGGTCCTGCTTGTTGACTGAGTTCTGCTCCGGCGGTGACCTCCACGCCATCCGCCAGAACCTTCCCGATAGGCGGTTTGA CCATGTTGCTGTCCGGTTTTATGCTTCAGAAGTGGTGGCAGCGCTAGAGTACCTCCACATGATGGGAATAATCTACCGTGATCTCAAACCGGAGAACGTC CTCGTCAGATCCGACGGCCACATCATGCTCACTGACTTCGACCTCTCCTTGAAAGACGACACGACTTCAGCAACGGCCCAGATCGTCTGCCAGCACGACA CGTGTCCACCATCCGCCCACTCCCCTTCACCCAGCCGACAATCCAATTCAGCCTCCTCCTGCATCATCTCCAACTGCATCTCCCCCGCCGCCTGCTTCCA CCCCGTGAGGAACCACTGTAGCAAAAGCAACAACAAGAAGAAGAAGAAATCCCTCGCCGGCAGCCGCAGCAGCCGGCGCCACCGCGGAACGCCGGAGATA GTGGCGGAGCCGGTGGACGCGCGGTCGATGTCGTTCGTGGGGACGCACGAGTACCTTTCGCCGGAGATCGTGTCCGGGGAGGGCCACGGCAGCGAGGTGG ACTGGTGGACGCTGGGGATATTCGTGTTCGAGATGTTCTACGGGACGACGCCGTTCAAGGGGTACGAGCACGAGTCGACGCTGGCGAACGTGGTGGCGAG GGCGCTGGAGTTCCCCAAGGAGCCGGCGGTTCCGGGTGCGGCTAAGGACTTGATTTCGCAGCTGCTGGTTAAGGATCCGACCCGGAGGTTGGGATCCACG CTCGGGGCGATGGCGATAAAGCACCACCCGTTTTTCGACGGGGTGAACTGGGCGCTGTTGAGGTGTAGAAAGCCGCCGTTTGTGCCCCGGCCGTTTAACT ATCGGAAAGTTGTTACGGATGTCGCTGATGATGTCGATAATTCGATTGATTATTTCTAG
AA sequence Show only first row Show all	>Lus10043435 pacid=23168153 polypeptide=Lus10043435 locus=Lus10043435.g ID=Lus10043435.BGIv1.0 annot-version=v1.0 MDHPEIPDMAVDDMDHMSFPSTPTSLSNTTTPGGASPVLSPGLSRPHRLPPCQVCRRIMQSQFSLPELRFMHRVGSGDIGSVYLVQLREGDGCVFAAKVM DKKEMSSRNKDSRARIEREILEVLDHPFLPALYATVESSGWSCLLTEFCSGGDLHAIRQNLPDRRFDHVAVRFYASEVVAALEYLHMMGIIYRDLKPENV LVRSDGHIMLTDFDLSLKDDTTSATAQIVCQHDTCPPSAHSPSPSRQSNSASSCIISNCISPAACFHPVRNHCSKSNNKKKKKSLAGSRSSRRHRGTPEI VAEPVDARSMSFVGTHEYLSPEIVSGEGHGSEVDWWTLGIFVFEMFYGTTPFKGYEHESTLANVVARALEFPKEPAVPGAAKDLISQLLVKDPTRRLGST LGAMAIKHHPFFDGVNWALLRCRKPPFVPRPFNYRKVVTDVADDVDNSIDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	3.0	0.9075
AT1G68110			ENTH/ANTH/VHS superfamily prot...		Lus10034431 [exp]	3.3	0.8694
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	3.5	0.8904
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	3.6	0.8634
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	4.9	0.9062
AT1G14630			unknown protein		Lus10039139 [exp]	7.4	0.8777
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	7.5	0.8884
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	8.8	0.8774
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	9.8	0.8757
AT3G24630			unknown protein		Lus10043221 [exp]	9.9	0.8612

Compare expression of checked genes

Lus10043435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.