Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043246 [exp] 70 / 4e-15 ND / Lus10019388 [exp] 52 / 1e-07 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10017725 [exp] 46 / 1e-05 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043436 pacid=23168145 polypeptide=Lus10043436 locus=Lus10043436.g ID=Lus10043436.BGIv1.0 annot-version=v1.0 ATGCGGGTGATGTATAGGGAGTACGTGATCTCCACGAAGCTTAAGTTGACCTTGACTCTCAACCAACATCGCTTATTTGAATCGTACCTGATTGCCAACT TGATTTTGATCGGCACAAAACTTCTTTCGTCTCTCGTGCCCCCAATCCTAGTTGATCCATGCGGGCGGAAAATACTGCTGGTTATCAGCATGTTGGTAGA GGCGATCGGGTCAAGAATTGTAGGGGCGTCAGCATTTCATCTTCCGCCCAAGGACATGGGAGTAAGCTTGGTTGTGACGGCTGCTCAGCTTTCCCTTCCC TTTCTATTCCCTCGAAAACTTTCCAACGCCCAACAATCTTCGTTTTCCGCCATGGACAACATCGATGATGATGACATCTACCCACCCAAATCTTACACAC TGAACCCCCGCACTGCGAAGAAGAAGTCTGCTTCACAGGCCTCCCACCGTCCCCTTCCCAGTTTCTACAACCACCGCCACGATGACGTCCAAAGCGATGA AGAAGACGAAGACGACGATGGCAACGACGATTTCATGTGGTACCCAAAGAGTAATAAGCAGCTCAAGAAGCCATCGGTTTCCAATTATGAATTCTTGGCA AGACAGAGGAAAAATAATCACAGCAGAGAATCAGATTTCTTTGGAAGTTAG
AA sequence Show only first row Show all	>Lus10043436 pacid=23168145 polypeptide=Lus10043436 locus=Lus10043436.g ID=Lus10043436.BGIv1.0 annot-version=v1.0 MRVMYREYVISTKLKLTLTLNQHRLFESYLIANLILIGTKLLSSLVPPILVDPCGRKILLVISMLVEAIGSRIVGASAFHLPPKDMGVSLVVTAAQLSLP FLFPRKLSNAQQSSFSAMDNIDDDDIYPPKSYTLNPRTAKKKSASQASHRPLPSFYNHRHDDVQSDEEDEDDDGNDDFMWYPKSNKQLKKPSVSNYEFLA RQRKNNHSRESDFFGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043436 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	1.4	0.8668
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	2.4	0.8612
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	10.0	0.7510
					Lus10001186 [exp]	12.4	0.7410
					Lus10027680 [exp]	13.9	0.7326
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	14.1	0.7668
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	15.2	0.7287
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	18.3	0.7141
					Lus10005225 [exp]	19.0	0.6946
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	19.4	0.7141

Compare expression of checked genes

Lus10043436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.