Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 429 / 6e-151 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 424 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 410 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 406 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 398 / 8e-139 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 357 / 6e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 303 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 283 / 4e-94 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 276 / 2e-91 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034148 [exp] 707 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 575 / 0 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 535 / 0 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 528 / 0 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 526 / 0 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 447 / 5e-158 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 422 / 9e-148 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 416 / 3e-145 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 412 / 2e-144 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 469 / 4e-167 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 459 / 6e-163 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 459 / 3e-162 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 454 / 7e-161 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 451 / 2e-159 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 395 / 6e-138 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 376 / 2e-130 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 325 / 4e-110 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 144 / 1e-38 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 143 / 3e-38 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10043437 pacid=23168081 polypeptide=Lus10043437 locus=Lus10043437.g ID=Lus10043437.BGIv1.0 annot-version=v1.0 ATGCTGCAACAAGCTTCCCTGGTGGCGGCGATCGGATTTCTAACTTGGATCTACCAGTCTGTCATCCGACCACCTCCTCCCAAGATTTGTGGCTCTCCCG GCGGACCTCCGGTTACTGCTACTCGCATCAAGCTCAGGGACGGTCGCCACCTGGCCTACAAGGAGCACGCCGCCGTCCCTAAGCACACCGCCAAGTTCAA GGTCATCTTCATCCATGGATTCACCTCCAGCCGCCTCGATCCCATGATTCAAGACAACCTCTCTCCGGAAGCGATCGAGGAGCTGAGTGTATATGTGTTG ACCTTTGACCGCCCGGGATACGGCGAGAGTGATCCGCATCCGAACCGGACTACCCAGAGTTTGGCTCTGGACATTGAAGAGCTGGCTGATCAGTTGGGCC TGGGCCCCAAGTTCTATGTAATGGGCAAGTCCATGGGCGGCCAGGTCGTATGGGGCTGTCTGAAATATATCCCTCATAGGCTGGCAGGGGCGGCCTTGGT GGCGCCGGTGATAAACCACTGGTGGAGGAGTTTCCCGGCGGAGCTGAGCAAGAAGGCTTACAATTCGCAGCTGGCCCAGGACCAGTGGGCTCTGAGAGTG GCCCATTATGCACCATGGCTTACATACTGGTGGAACACCCAGAAGTTGTTCCCAACCTCTGGCGTCATAGCTAGGAAACGTGAGACACTTTCCTCACAGG ATGTCCAGCTCATTTCCCAGCACGGCAACGACCCTAAACTCAAGAACGTGGCGACGCAGCAGGGAGTGTACGAGTCGCTGCACAGGGACTTGATGATAGG GTTCGGGAAGTGGGAGTTCGACCCGATGGAGATTGAGAATCCGTTCCCTAACAACGAAGGTTCGGTCCATCTGTGGCAAGGAGACGAAGACATGAAGGTT TCGGTTGAGCTGCAGCGTTACATTGCTAAGAGACTTCCATGGATACAGTACCATGAGCTGCCTGGAGGTGGGCATATTCTGCATTTCGTTCCTGGGTTGA TTGAAGGTGTCCTCAGAGCTCTTTTAGTCGAACCACAAAGTCACAGAGAGGACTAG
AA sequence Show only first row Show all	>Lus10043437 pacid=23168081 polypeptide=Lus10043437 locus=Lus10043437.g ID=Lus10043437.BGIv1.0 annot-version=v1.0 MLQQASLVAAIGFLTWIYQSVIRPPPPKICGSPGGPPVTATRIKLRDGRHLAYKEHAAVPKHTAKFKVIFIHGFTSSRLDPMIQDNLSPEAIEELSVYVL TFDRPGYGESDPHPNRTTQSLALDIEELADQLGLGPKFYVMGKSMGGQVVWGCLKYIPHRLAGAALVAPVINHWWRSFPAELSKKAYNSQLAQDQWALRV AHYAPWLTYWWNTQKLFPTSGVIARKRETLSSQDVQLISQHGNDPKLKNVATQQGVYESLHRDLMIGFGKWEFDPMEIENPFPNNEGSVHLWQGDEDMKV SVELQRYIAKRLPWIQYHELPGGGHILHFVPGLIEGVLRALLVEPQSHRED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10043437 [exp]	0	1
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	4.5	0.7862
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	16.0	0.7724
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	18.7	0.7935
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	19.1	0.7492
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	27.0	0.7945
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	27.9	0.7435
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	33.7	0.7781
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	41.8	0.7710
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10029766 [exp]	44.2	0.7229
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10019284 [exp]	45.4	0.7774

Compare expression of checked genes

Lus10043437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.