Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54250 674 / 0 GHMP kinase family protein (.1) AT2G38700 643 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034147 [exp] 865 / 0 AT3G54250 674 / 0.0 GHMP kinase family protein (.1) Lus10008966 [exp] 735 / 0 AT3G54250 668 / 0.0 GHMP kinase family protein (.1) Lus10028855 [exp] 686 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237900 [exp] 740 / 0 AT3G54250 688 / 0.0 GHMP kinase family protein (.1) Potri.008G021100 [exp] 729 / 0 AT3G54250 683 / 0.0 GHMP kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043438 pacid=23168268 polypeptide=Lus10043438 locus=Lus10043438.g ID=Lus10043438.BGIv1.0 annot-version=v1.0 ATGGCGGATAAATGGGTTAGGATGGTGACGGCGCAAACGCCAACCAATATAGCCGTGATCAAGTACTGGGGAAAGAGGGATGAGACCTTGATTTTGCCCG TCAATGACAGCATTAGCGTCACTTTGGATCCCGCCCATCTCTGTACTACAACCACTGTTGCTGTCAGTCCCAGCTTCGATCAGGATCGGATGTGGCTCAA TGGCAAGGAAGTTTCTCTCTCAGGAGCTAGATATCAGAATTGTTTAAGAGAAATTCGAAGTCGTGCTTGTGATGTTGAGGATGAAGAAAAGGGTATCAGG ATAGAGAAGAAGGACTGGGATAATTTGCACGTCCACATTGCTTCCTACAATAATTTCCCCACTGCTGCTGGATTGGCTTCATCTGCCGCGGGGTTTGCAT GTCTTGTTTTCTCCCTTGCAAAGCTAATGAATGCAAAAGAAGATAACAGCGATCTTTCTGCAATTGCTAGGCAAGGTTCTGGGAGTGCCTGCCGCAGTCT ATTTGGCGGATTCGTGAAGTGGATCATGGGAGAGGCTAATGATGGGCATGACAGCCTCGCTGTTCAGCTGGTGGACGAGAAACACTGGGATGAACTTGTT ATAATTATTGCTGTGGTAAGTTCACGGCAGAAAGAAACAAGTAGCACGTCAGGAATGCGGGAAAGTGTTGAAACTAGTTTGCTTTTGCAGCATCGAGCAA AGGAAATTGTACCAAAAAGAATTGTCCAAATGGAGGAGGCCATAAAGAACAAGGATTTTGCTTCCTTCACAGAATTAACCTGTGCTGATAGTAATCAGTT CCATGCAGTGTGCCTCGACACTTGTCCGCCAATATTCTACATGAATGATACATCCCACAGGCAAGTCAACAGGCTGTTTCATCTAACATGGAAATGTTTT GAATTTTCTTCATCTTTTAGGGTAATCAGCTGCGTCGAGAAATGGAATAGATCTGTAGGAACACCTCAGGTAGCTTACACCTTTGATGCTGGGCCGAATT CTGTCCTTATTGCACGTAACCGGAAGGCTGCAGCTGAGCTTTTGCAAAAGCTGCTCTTCTACTTCCCTCCAAACTCTGATGCAGATTTGAACAATTATGT GATTGGAGACAAATCGATTCTTAAAGATGCCGGAATTGAAGGGATGAAGGACGTGGAAACTCTAGCACCACCCCCAGAAAACAAGGATGCTCAGAGATAC AAAGATGGTGTTAGCTACTTCATTTGCACAAGACCAGGCAGAGGTCCCGTGTTGTTGGCGGATGAAACTCAGGCCCTTCTCAACCCGGAAACCGGGCTTC CCAAATAG
AA sequence Show only first row Show all	>Lus10043438 pacid=23168268 polypeptide=Lus10043438 locus=Lus10043438.g ID=Lus10043438.BGIv1.0 annot-version=v1.0 MADKWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPSFDQDRMWLNGKEVSLSGARYQNCLREIRSRACDVEDEEKGIR IEKKDWDNLHVHIASYNNFPTAAGLASSAAGFACLVFSLAKLMNAKEDNSDLSAIARQGSGSACRSLFGGFVKWIMGEANDGHDSLAVQLVDEKHWDELV IIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEIVPKRIVQMEEAIKNKDFASFTELTCADSNQFHAVCLDTCPPIFYMNDTSHRQVNRLFHLTWKCF EFSSSFRVISCVEKWNRSVGTPQVAYTFDAGPNSVLIARNRKAAAELLQKLLFYFPPNSDADLNNYVIGDKSILKDAGIEGMKDVETLAPPPENKDAQRY KDGVSYFICTRPGRGPVLLADETQALLNPETGLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	0	1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	3.2	0.8685
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	7.3	0.8208
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	8.4	0.8449
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	9.4	0.8644
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10016972 [exp]	9.8	0.8553
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	14.5	0.8316
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	15.0	0.8449
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	15.0	0.8516
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	18.3	0.8221
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	19.1	0.8586

Compare expression of checked genes

Lus10043438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.