Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10770 169 / 4e-48 Single-stranded nucleic acid binding R3H protein (.1.2) AT3G56680 166 / 9e-47 Single-stranded nucleic acid binding R3H protein (.1) AT5G05100 162 / 1e-45 Single-stranded nucleic acid binding R3H protein (.1) AT2G40960 158 / 9e-44 Single-stranded nucleic acid binding R3H protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034141 [exp] 770 / 0 AT3G56680 177 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1) Lus10027292 [exp] 172 / 3e-49 AT3G56680 329 / 8e-112 Single-stranded nucleic acid binding R3H protein (.1) Lus10038997 [exp] 171 / 1e-48 AT3G56680 327 / 5e-111 Single-stranded nucleic acid binding R3H protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021900 [exp] 517 / 0 AT3G56680 192 / 4e-57 Single-stranded nucleic acid binding R3H protein (.1) Potri.010G237500 [exp] 510 / 6e-179 AT3G56680 171 / 4e-49 Single-stranded nucleic acid binding R3H protein (.1) Potri.006G034700 [exp] 179 / 9e-52 AT3G56680 383 / 8e-133 Single-stranded nucleic acid binding R3H protein (.1) Potri.016G032500 [exp] 177 / 6e-51 AT3G56680 375 / 1e-129 Single-stranded nucleic acid binding R3H protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043439 pacid=23168174 polypeptide=Lus10043439 locus=Lus10043439.g ID=Lus10043439.BGIv1.0 annot-version=v1.0 ATGGAGGGCTCTGTGTCAGATGATCTCGGAGCCCCGGATTCATGGGAGTTGGCCGATTTGGACGATACTATGAATCGTTTAAAGCTCAAGGACTCCAAGC TACAATCGACTCAGCTGGAACTACCTGATGATTTGGTTTCGGCTCCAGCTGGTCTTTCTTCCGGCTCCGTCCGGATTGGCGGAGGCAGAGTATCGGAGGA CGCTATCGACCAAGTGGATCAGTTCCTCAGGGAGGCTTTGCAGAACCCTCGTGAGCGACTCTCTGTTCTGAGAATGGAGCAAGATATTGAGAAGTTTATT CGTGACCCAACACAACAGCAACTCGAATTTCAGCAGCTTCCTACTTCATATCTGAGATTGGCTGCACATCGTGTGGCACAGCATTATTCACTGCAATCAA TGGTTTTGTTGGACAACAGTTTGCCTGATGGTTCTGGTTCAAGAATTATTGTTCACAAGGCTGCTGGATGCCGGATTCCTTTGATTCGCCTAGCTGACAT CCCTGTGAATTTGCCATCTGAAGATGGCAGTTCCGTGAAAGTTGCAATTAAGCAGAGGCCACGGAAACATTCTCAAACTGCAAACAGTTCTAATTCAAAT TCATCAAAATCAAGTGGTTCCAAGAGTATGGAGGAAAGGAAAGAGGAATACAACAAGGCACGAGCTCGAATATTTAATTCCACCAATCATAGTGGTAATT CTACTGGGAAGGCAGAAAGTGAACCAAGGAGACAAGATATTCCACGGCTGGGTTCAGTTGGTTCAGAAAATGGCCAGGTTAAATCTGCTTTAGGAAATTC TGGTATTAACCAGGGAAGGGGTGTAATTGAACCCTCTACTAGCACCCCTAGATTGTCTAGACCGAGGATGGAAAATGAGCCAATTAACAGGCCTAGGCCT AATAATAATAATAATAAGGTGGCCATATTTCGGGATCGTGAAGTTGATAGGAAGGATCCTGATTATGACAGAAGTTATGACAGTGGAGGACCTTACACCA TCCAGCCTATGTATGCCCCTGCATTGAGTTACAACACTGAATTCCCACAACTTGGAGCTTGTCATAGGCCCCAGATGCCAACAGAACACCAGCCACGTTC TCTTCCACAACATTTAGTAGGGACATGGGTTGCACAATCATCCCCTGCCGGATTAGGTTATGGTCATCCAGAAACAATGATGCCACCCTACAGTCCACAT CATATGGGTATGCGACCTAATTCTGGTCTGTATATGCATTCCTCTCAATACCCTTGTCAGCGCCCAGGAATGTCTTTTATCAATCCTCATGACCATATTC AACAAACCTTTGCACAGTCTCAACAACCGCAATCTGATGCCAGTTTTGGATTAGCCCGGCCCCGAAGTGCGTTGGTGGTATGCGCCCGCCCCGAAGGAGG TGCTTGGGCCATGCCTGCACCCTGCCACTTGGTGCTTGAGCTTGAAAATTCGATGGGCTTAATCGGCTACATTCAATATTCCAAGTGGCAGGGTGCAGGC AGGTAA
AA sequence Show only first row Show all	>Lus10043439 pacid=23168174 polypeptide=Lus10043439 locus=Lus10043439.g ID=Lus10043439.BGIv1.0 annot-version=v1.0 MEGSVSDDLGAPDSWELADLDDTMNRLKLKDSKLQSTQLELPDDLVSAPAGLSSGSVRIGGGRVSEDAIDQVDQFLREALQNPRERLSVLRMEQDIEKFI RDPTQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDNSLPDGSGSRIIVHKAAGCRIPLIRLADIPVNLPSEDGSSVKVAIKQRPRKHSQTANSSNSN SSKSSGSKSMEERKEEYNKARARIFNSTNHSGNSTGKAESEPRRQDIPRLGSVGSENGQVKSALGNSGINQGRGVIEPSTSTPRLSRPRMENEPINRPRP NNNNNKVAIFRDREVDRKDPDYDRSYDSGGPYTIQPMYAPALSYNTEFPQLGACHRPQMPTEHQPRSLPQHLVGTWVAQSSPAGLGYGHPETMMPPYSPH HMGMRPNSGLYMHSSQYPCQRPGMSFINPHDHIQQTFAQSQQPQSDASFGLARPRSALVVCARPEGGAWAMPAPCHLVLELENSMGLIGYIQYSKWQGAG R

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	0	1
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	3.5	0.8363
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	5.1	0.7866
AT5G11700			unknown protein		Lus10011144 [exp]	7.5	0.8366
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	8.4	0.8058
AT5G22450			unknown protein		Lus10004878 [exp]	17.1	0.8209
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	19.4	0.8070
AT1G14740			Protein of unknown function (D...		Lus10030771 [exp]	20.3	0.7074
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	23.3	0.7987
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	28.4	0.8000
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	29.3	0.7834

Compare expression of checked genes

Lus10043439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.