Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51390 384 / 6e-135 ATNFU1, NFU5 NFU domain protein 5 (.1) AT3G20970 383 / 8e-135 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT5G52840 179 / 3e-56 NADH-ubiquinone oxidoreductase-related (.1) AT4G28005 80 / 2e-18 unknown protein AT5G49940 62 / 1e-11 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 59 / 5e-10 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 54 / 3e-08 ATCNFU1, NFU1 NFU domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034140 [exp] 409 / 3e-146 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10039296 [exp] 205 / 3e-66 AT5G52840 271 / 1e-94 NADH-ubiquinone oxidoreductase-related (.1) Lus10027539 [exp] 202 / 3e-65 AT5G52840 275 / 3e-96 NADH-ubiquinone oxidoreductase-related (.1) Lus10014951 [exp] 190 / 2e-60 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10038835 [exp] 188 / 1e-59 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10015481 [exp] 60 / 3e-10 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001439 [exp] 57 / 3e-09 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 56 / 8e-09 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10009999 [exp] 51 / 3e-07 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237400 [exp] 371 / 4e-130 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.008G022000 [exp] 239 / 9e-79 AT3G20970 253 / 2e-85 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.004G071900 [exp] 177 / 3e-55 AT5G52840 265 / 5e-92 NADH-ubiquinone oxidoreductase-related (.1) Potri.017G149100 [exp] 156 / 4e-47 AT5G52840 250 / 3e-86 NADH-ubiquinone oxidoreductase-related (.1) Potri.006G165600 [exp] 58 / 8e-10 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.002G192200 [exp] 55 / 1e-08 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.003G009300 [exp] 54 / 2e-08 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.004G222600 [exp] 53 / 4e-08 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.014G117700 [exp] 49 / 1e-06 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08712 [flax] [poplar] Nfu_N Scaffold protein Nfu/NifU N terminal PF04716 [flax] [poplar] ETC_C1_NDUFA5 ETC complex I subunit conserved region CL0232 [flax] [poplar] NifU PF01106 [flax] [poplar] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Lus10043440 pacid=23168087 polypeptide=Lus10043440 locus=Lus10043440.g ID=Lus10043440.BGIv1.0 annot-version=v1.0 ATGTTCCTGCGGGCGGTGGCGCGGCCGCTAATGGCCAAGGTGAAACAGACGACGGGGATCGTCGGTCTCGAAGTGGTGCCCAACGCTCGAGAAGTACTGA TCAGCCTTTACAACAAAACCCTAAATGAGATTCAGGCGGTCCCTTCCGATGAAGGATACCGGAAGGCGGTTGAGAGTTCTACCAAGCACAGGCTGAATGT TTGCCAGGAGGAAGAGGATTGGGAGTCGATCGAGAAGAAGCTTGGTTGCGGTCAGGTCGAGGAGCTGATTGAGGAGGCCCAGGACGAGCTCAAGCTCATC GGGAAAATGATAGGGCAGAGAAGGACGATGTTTATACAAACTCAAAGCACACCAAATCCATCATCTTTAATGTTCCACCCCGGGAAACCGGTGATGGAAG TTGGAAGTTCAGATTTCCCAAATGCTCGTGCAGCGATGACTTCTCCGTTAGCTAAAGCCATCTTTGGAATTGATGGTATTGTAAGGGTCTTCTATGGGTC TGATTTTGTTACAGTCACAAAATCAGATGACATGTCCTGGGATCTATTGAAACCTGAAATCTTTGCGGCAATCATGGACTTCTATTCTTCTGGGCAACCA TTGTTTCTGGACTCCCAAACTGCTTCTGCCAAGGACACAGCTATTCAAGAGGATGACTCGGAAACAGTTGCAATGATAAAAGAGCTGTTGGAAACCCGTA TTCGACCAGCAGTGCAAGATGATGGCGGAGATATCGAATACTGTGGATTTGATCAAGAAACTGGAATAGTGAAATTAAGAATGCAAGGAGCATGCAGTGG CTGCCCAAGCTCATCTGTGACTTTGAAATCTGGGATCGAGAATATGCTGATGCACTATGTTTCAGAGGTTAAAGGCGTGGAGCAGGAACTAGATGGCGAA GAAGAAGACAACACGTCCTTAGCTGGTTAA
AA sequence Show only first row Show all	>Lus10043440 pacid=23168087 polypeptide=Lus10043440 locus=Lus10043440.g ID=Lus10043440.BGIv1.0 annot-version=v1.0 MFLRAVARPLMAKVKQTTGIVGLEVVPNAREVLISLYNKTLNEIQAVPSDEGYRKAVESSTKHRLNVCQEEEDWESIEKKLGCGQVEELIEEAQDELKLI GKMIGQRRTMFIQTQSTPNPSSLMFHPGKPVMEVGSSDFPNARAAMTSPLAKAIFGIDGIVRVFYGSDFVTVTKSDDMSWDLLKPEIFAAIMDFYSSGQP LFLDSQTASAKDTAIQEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDQETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQELDGE EEDNTSLAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	0	1
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	3.5	0.7894
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	3.6	0.7995
					Lus10007581 [exp]	13.4	0.7895
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	13.4	0.7541
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	14.5	0.7724
AT5G27440			unknown protein		Lus10041604 [exp]	15.0	0.7381
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	16.6	0.7452
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	20.8	0.7558
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	23.4	0.7056
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	24.5	0.7401

Compare expression of checked genes

Lus10043440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.