Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 186 / 7e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 160 / 7e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 152 / 9e-45 SGNH hydrolase-type esterase superfamily protein (.1) AT5G33370 87 / 5e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 86 / 9e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 83 / 2e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 83 / 2e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 80 / 2e-17 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034139 [exp] 297 / 3e-102 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 220 / 1e-70 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003253 [exp] 218 / 4e-70 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 177 / 2e-54 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 172 / 1e-49 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 88 / 3e-20 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 86 / 1e-19 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 84 / 2e-18 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10040791 [exp] 83 / 2e-18 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237000 [exp] 264 / 2e-88 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 198 / 1e-62 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 179 / 2e-55 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 176 / 3e-54 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 140 / 6e-40 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 110 / 2e-29 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 90 / 6e-21 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 89 / 1e-20 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 88 / 3e-20 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008904 [exp] 86 / 3e-20 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10043441 pacid=23167998 polypeptide=Lus10043441 locus=Lus10043441.g ID=Lus10043441.BGIv1.0 annot-version=v1.0 ATGGACAAGTCTCGAGCTTTTCCTATTCTACTCTGCCTCTCCTGCTTATTTCCAGGCATTTCGAAATCTGATGCTGCTACTGCTGCTGTGAAGCTTTTCG TCTTCGGGGACTCGTATGCTGATACGGGTAACTGGGACAAGTCTGCTGGATCCTGGAATCAGCCCTATGGGATCACATTTCCTGGAAAACCAGCTGGTCG CTTCTCTGATGGTCGAATCTTCACCGATTATATAGCTTCGTTTCTGGGGATAGAGTCTCCAGTACCCTACACATTGATGACGAAAACTGCACAAGGGTCT CCTAGTCTTCAGTACGGTTTGAACTTCGCATATGGAGGAACTGGAGTGTTTGACACGTTGATCCGAGCTCCGAATATGGCTGCCCAGATCAATCTTTTCC AGAAGACGATTGAACAAAAAACATACACTAAACAAGACCTCATCAACTCTTCCGTTGCCCTGGTCTCCATAGCTGGCAATGACTACTTGACTTACGTCCA GAGAAACGGAAAACTCCAGGAACTGCCTAATCTGACTAAAAGGGTCATAGCTCAGCTTACCAGCAACCTAATCCTCATCCATGGTTTAGGAGTTGCAAAA GTAGCAGTTACCACATTACCTCCGATTGGCTGGTTGCCAACCGCGGATCTGCAAAAATAG
AA sequence Show only first row Show all	>Lus10043441 pacid=23167998 polypeptide=Lus10043441 locus=Lus10043441.g ID=Lus10043441.BGIv1.0 annot-version=v1.0 MDKSRAFPILLCLSCLFPGISKSDAATAAVKLFVFGDSYADTGNWDKSAGSWNQPYGITFPGKPAGRFSDGRIFTDYIASFLGIESPVPYTLMTKTAQGS PSLQYGLNFAYGGTGVFDTLIRAPNMAAQINLFQKTIEQKTYTKQDLINSSVALVSIAGNDYLTYVQRNGKLQELPNLTKRVIAQLTSNLILIHGLGVAK VAVTTLPPIGWLPTADLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043441 [exp]	0	1
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043442 [exp]	1.0	0.9579
					Lus10035688 [exp]	4.9	0.8809
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	4.9	0.8887
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004547 [exp]	6.5	0.8112
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	7.5	0.8792
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10007761 [exp]	7.7	0.8391
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	11.0	0.8628
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	13.3	0.8377
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	13.4	0.8663
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	14.5	0.8403

Compare expression of checked genes

Lus10043441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.