Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56160 278 / 3e-88 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019540 [exp] 246 / 5e-76 AT3G56160 325 / 8e-108 Sodium Bile acid symporter family (.1) Lus10043384 [exp] 99 / 3e-22 AT3G56160 148 / 1e-40 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021600 [exp] 348 / 5e-116 AT3G56160 432 / 6e-150 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10043443 pacid=23167975 polypeptide=Lus10043443 locus=Lus10043443.g ID=Lus10043443.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCCATTCAAACCCCAAGAGTAGGACTTCCATCTCCAGAAAGGCCAAGGCTTCTTCACCATTTAACGACACGAAGCAAATTGACACCAGCAA TTCATATCCGAAGACACTCAAATCCTTCACTCTCCTTCAATCGCAGCAGCTCAGTCCGCGTCCCTTTCCTAATCAGAGCCTGTCAACCTCCTAATCAGGC TGGTGGCAATACAAATGAACCTGCTAGGAGTTCTGGATTGGCTAAGGAGGTGGGTTGGACAAATTCATTGCTCAACTTTGTTGGGAACAACTTTCTTCCA TTGGCTCTCATGGGTGGGGTAGTGCTTGGACTTGCAAATCCCAGTCTTGGCTGTCTCGCTGATAGATATAAACTGTCAAAGTTTAGCACATTTGCTATAT TCGTTATCTCTGGCATGACATTGCGAAATGGGGATATTGGTGCTGCTGCAGAAGCATGGCCAGTGGGAGTTCTTGGACTTGTCCATCCTCGTGATCATTT TGCATACTCTTTGCCTATAATCAACTTATTTCCTCTTGCTATCAAAACTTTATGGTTCATGGTTATCATTTGTGTCTTCTCATGTTGTTTTTGTGCTTCC ATTGACTGGTGGATTTCTGTGCATATTAATGCAGCTCTCCATCTTATTCTTTACACCATGCTTTTCAAGCGCGATTGTGCAAATTCATCTCCAGCCTCAG GAATTCGTGTCAGGTTTGATGTTTTACTCGTCTGTGAGCACGCTCCTAGCAATGGCCTGATATTTCCATGCATCCTGAATGATTCCGTAATGCCCATACA TGTTAAAAGATTTGAGTTTTCCCCAGGGTTAGCAATATTTTGCTGCATGCCAACCACATTATCCAGTGGAGTGGCACTAACTCAGCTTGCTGGGGGTAAT TCTGCTCTGGCTCTTGCAATGACAGTGATATCAAGCCTTTTGGGAATTTTGATGGTTCCATTTTCTATCTCCAAGTATGTTGCTGCTGGAGTCGGTGTTT CCGTTCCAACTAAAGAACTATTTAGAAGTCTTGTTCAGATGCTTCTGGTTCCACTAATCTTGGGGAAGATTTTTCGGGAGTCCTTCAAAGGCTTGGCAGA CTTTGTTGATGAAAACCGTAGGCTCTTCTCAAGGTTATCAGCAGTTTTTCTAAGTTTAGTTCCATGGATACAAGTGAGCAGGTCAAGGTCACTGTTGCTT ATGGTGAAGCCTGCAGTATTCTTGGTTGCTGTTGGACTAGGAGTGCTTCTGCACCTCGTCCTGTTGGCATTCAATGCTATCACAATAAACAGCCTCTCTG CTCTTTCTGGTGGCGACCAATCAGTTTTCTCTAAGAAAGAAAATTCTACTGCTTACTTGCTTGTAGCGAGCCAGAAAACTCTTCCTGTATTGGTGGCTGT AGTGGAACAGCTTGGCGGTGCATTTGGTGAATCTGGTCTGCTGGTTCTTCCTTGTGTCGCTGCTCATTTAGTTCAGATCATAATTGACTCTGTTCTTGTT AATGGCTGGCTTCGTAAAGATCTTGCTCCGAAAAATGTCAAGGCATCATGA
AA sequence Show only first row Show all	>Lus10043443 pacid=23167975 polypeptide=Lus10043443 locus=Lus10043443.g ID=Lus10043443.BGIv1.0 annot-version=v1.0 MASSIQTPRVGLPSPERPRLLHHLTTRSKLTPAIHIRRHSNPSLSFNRSSSVRVPFLIRACQPPNQAGGNTNEPARSSGLAKEVGWTNSLLNFVGNNFLP LALMGGVVLGLANPSLGCLADRYKLSKFSTFAIFVISGMTLRNGDIGAAAEAWPVGVLGLVHPRDHFAYSLPIINLFPLAIKTLWFMVIICVFSCCFCAS IDWWISVHINAALHLILYTMLFKRDCANSSPASGIRVRFDVLLVCEHAPSNGLIFPCILNDSVMPIHVKRFEFSPGLAIFCCMPTTLSSGVALTQLAGGN SALALAMTVISSLLGILMVPFSISKYVAAGVGVSVPTKELFRSLVQMLLVPLILGKIFRESFKGLADFVDENRRLFSRLSAVFLSLVPWIQVSRSRSLLL MVKPAVFLVAVGLGVLLHLVLLAFNAITINSLSALSGGDQSVFSKKENSTAYLLVASQKTLPVLVAVVEQLGGAFGESGLLVLPCVAAHLVQIIIDSVLV NGWLRKDLAPKNVKAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	0	1
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	2.4	0.8690
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	4.7	0.8652
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	5.7	0.8599
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	6.5	0.8490
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	6.9	0.8628
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	7.1	0.8518
AT1G76405			unknown protein		Lus10025161 [exp]	8.1	0.8395
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	9.8	0.8323
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	10.2	0.8132
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	12.7	0.8517

Compare expression of checked genes

Lus10043443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.