Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 209 / 4e-62 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 191 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 186 / 2e-53 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 163 / 8e-45 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT1G07250 162 / 2e-44 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G15490 158 / 7e-43 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34135 158 / 8e-43 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G27570 157 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 155 / 4e-42 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT1G07240 154 / 2e-41 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028865 [exp] 363 / 9e-122 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 358 / 3e-119 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 345 / 1e-114 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 344 / 5e-114 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 343 / 2e-113 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10043446 [exp] 285 / 2e-94 AT2G22590 74 / 3e-15 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 256 / 4e-81 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 224 / 8e-68 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 191 / 4e-55 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 357 / 3e-119 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 219 / 6e-66 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 216 / 2e-64 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 200 / 4e-58 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 197 / 2e-57 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 192 / 2e-55 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 189 / 3e-54 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 182 / 1e-51 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 176 / 1e-49 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 176 / 3e-49 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10043445 pacid=23168407 polypeptide=Lus10043445 locus=Lus10043445.g ID=Lus10043445.BGIv1.0 annot-version=v1.0 ATGGACTACGACGGCGGCGGCGGCCAACAGCAGATGAAGAGAACCACCGTACTGCTACTCCCATGGCTAGGCCACGGCCACATCTCCCCATACCTAGAGC TATCCAAACGCCTCTCTTCCCACAACTTCAACGTCTACTTGTGCTCAACTCCCGCCAACCTCAACCCTTTAAAACCAAAACTACTAGCAGAATCCTCTAC AATCACACTAGTAGAGCTCCACCTCCCTTCAACGCCGCAACTCCCGCCCCATTACCACACCACCAACGGCCTCCCACCGCACTTGATGCCCCACCTCAAG TTGGCCTTCGACTCCGCGGCCACTCGGTCGGCCTTCTCGTCGATACTGATGTCGGTGTCGCCTGACTTGCTCATCTACGACTTCCTCCAGCCTTGGGCTC CCCAGCTGGCTTCCTCACTTCTCCACATCCCCGCTGTCTTGTTCCTCTCCACCGGCGCCGCCATGTTCGCCTTTGCTGCGCATGCCTACAAATTTGGTCG TGATAATATTAATAACGAAGCATCGTTTCCGTTTGCTTCCTCCATTTATCTAAGGGATGATCGAGAGGAGAGGGCCTTCGTCTCCAGAATGCTGGAACCT ACCTGTGGTAATGAGATCAATGACCATAATTGGGTCCAGCTTTGCCAGGAAAGATCCTGCAGTATCATCCTTATTAAGACGTTCAGAGAGATCGAAGGGA AATACTTGGACTACATATCCGAGCTCGCCGGGAAGAGACATGTCCCGGTGGGACCACTACTCCAAAAAACAACATCATCAGAAGAAGACGGCGGCCGAAG AATTTCAAAATGGCTGGACGCCAAACAAACTTCCTCCACCGTCTTCGTCTCCTTCGGCTCCGAATTTTTCCTTTCCCCTGACCTAATCCACGAAATCGCC CACGGATTGGAGCTCAGCGGCGCCAATTTCGTGTGGGTGTTGAGATTCCCCTTGGAAGATCAAAAGAGCCCAAACTCTGCGGCAGCGGAAGCTCTGCCGC CAGGGTTTCTAGACAGGGTCGGGGAGAAGGGATTGGTGGTGGAAGGATGGGCGCCGCAATCAGCGATCCTGGCGCACGATAGCGTGGGAGGGTTCGTGAG CCACTGCGGGTGGAGCTCGGTGATGGAGAGCATGTGGTACGGGGTTCCGATCGTGGCGATGCCGATGCATTTGGACCAGCCGTTGAACGCGAGGCTAGTG GAGGAAATTGGGGTTGGGGTGGAAGTTACGAGGGATGGGAGATCGGGTAAGGCCGATAGGAAGGAAGTGGCTAAAGTGATTAGGGAAGTGGTGATGGGCG TGGAGGGGAATAATGGCGTCGGGGAGAAGGTGAGGAGGAAGGCGAGAGAGATGAGTGAGGTTATGAAGAAGAAAGGGGATCTGGAGATCGATGATGTTGT TCATGAACTGCTTCAGCTTTGCAGGAGTACAAGTGTTAATTACAATTAG
AA sequence Show only first row Show all	>Lus10043445 pacid=23168407 polypeptide=Lus10043445 locus=Lus10043445.g ID=Lus10043445.BGIv1.0 annot-version=v1.0 MDYDGGGGQQQMKRTTVLLLPWLGHGHISPYLELSKRLSSHNFNVYLCSTPANLNPLKPKLLAESSTITLVELHLPSTPQLPPHYHTTNGLPPHLMPHLK LAFDSAATRSAFSSILMSVSPDLLIYDFLQPWAPQLASSLLHIPAVLFLSTGAAMFAFAAHAYKFGRDNINNEASFPFASSIYLRDDREERAFVSRMLEP TCGNEINDHNWVQLCQERSCSIILIKTFREIEGKYLDYISELAGKRHVPVGPLLQKTTSSEEDGGRRISKWLDAKQTSSTVFVSFGSEFFLSPDLIHEIA HGLELSGANFVWVLRFPLEDQKSPNSAAAEALPPGFLDRVGEKGLVVEGWAPQSAILAHDSVGGFVSHCGWSSVMESMWYGVPIVAMPMHLDQPLNARLV EEIGVGVEVTRDGRSGKADRKEVAKVIREVVMGVEGNNGVGEKVRRKAREMSEVMKKKGDLEIDDVVHELLQLCRSTSVNYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	0	1
					Lus10029449 [exp]	1.4	0.8848
AT5G18310			unknown protein		Lus10042520 [exp]	2.0	0.8804
					Lus10038613 [exp]	2.4	0.8786
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	5.9	0.8344
					Lus10001257 [exp]	11.5	0.8107
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	11.5	0.8121
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	13.1	0.8642
					Lus10030050 [exp]	13.5	0.7481
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	13.6	0.7614
					Lus10010449 [exp]	15.4	0.8019

Compare expression of checked genes

Lus10043445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.