Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 74 / 4e-15 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 68 / 4e-13 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 66 / 2e-12 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 65 / 4e-12 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT3G29630 57 / 2e-09 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 53 / 5e-08 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 53 / 6e-08 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 52 / 6e-08 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 52 / 7e-08 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 52 / 1e-07 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043445 [exp] 333 / 3e-113 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 155 / 1e-44 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 153 / 5e-44 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 153 / 9e-44 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 152 / 2e-43 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 144 / 3e-40 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10034138 [exp] 104 / 6e-27 AT1G66240 115 / 1e-32 homolog of anti-oxidant 1 (.1.2.3) Lus10012726 [exp] 84 / 2e-18 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 77 / 2e-16 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024801 [exp] 153 / 1e-45 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024900 [exp] 150 / 3e-43 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 83 / 2e-18 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 82 / 6e-18 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 79 / 6e-17 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 75 / 2e-15 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 72 / 2e-14 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 67 / 1e-12 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 62 / 5e-11 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 57 / 3e-09 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043446 pacid=23168166 polypeptide=Lus10043446 locus=Lus10043446.g ID=Lus10043446.BGIv1.0 annot-version=v1.0 ATGGATAACGGCGGCGGCGGACAACAGCAGATGAAGAGAACCACCGTACTGCTACTCCTATGGCTAGGCCACGGCCACATCTCCCCATACCTAGAGCTAG CCAAACGCCTCTCTTCCCACAACTTCAACGTCTACTTGTGCTCAACTCCCGCCAACATCAACCCTTTAAAACCCAAATTATTACAATCACCATCAATCAC ACTAGTAGAGCTCCACCTCCCTTCAACGCCGCAACTCCCGCCCCACTACCACACCACCAACGGCCTCCCGCCGCACCTGATGCCCCACCTTAAGTCGGCC TTCGACTCTGCTGCCACTCGTGACGCCTTCTCGTCGATACTGATGTCGGTCTCGCCTGACTTGCTAATCTACGACTTCCTCCAACCTTGGGCTCCTCAGC TGGCTTCGTCGCTCCTCCACATTCCGGTCGTCTTGTTCCTCTCCACCGGTGCTGCAATGTACTCTTATTTAGCACATTCCATCAGATATGGTAATGATGT TGATGATGGTAATGATAATGGTAAAGCGGCGTCGTTTCCGTTTTCGTCGTCTATTTATCTGAGGGATTACGAGAAGAAGGCCGTCTCCCGGCGGCTGTTG GAACCTACCCATGTTAATGACCGAACTTGGATCCAGCTTTGCCAGGAAAGATCCCACGGTATCATCCTTATTAAGGTACATTGA
AA sequence Show only first row Show all	>Lus10043446 pacid=23168166 polypeptide=Lus10043446 locus=Lus10043446.g ID=Lus10043446.BGIv1.0 annot-version=v1.0 MDNGGGGQQQMKRTTVLLLLWLGHGHISPYLELAKRLSSHNFNVYLCSTPANINPLKPKLLQSPSITLVELHLPSTPQLPPHYHTTNGLPPHLMPHLKSA FDSAATRDAFSSILMSVSPDLLIYDFLQPWAPQLASSLLHIPVVLFLSTGAAMYSYLAHSIRYGNDVDDGNDNGKAASFPFSSSIYLRDYEKKAVSRRLL EPTHVNDRTWIQLCQERSHGIILIKVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	0	1
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	1.0	0.9121
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	3.0	0.8725
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	3.2	0.8827
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011435 [exp]	5.6	0.7803
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	6.3	0.8242
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	8.5	0.8700
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	8.8	0.8437
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	9.7	0.8662
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	10.4	0.7728
AT4G25030			unknown protein		Lus10034730 [exp]	11.5	0.8228

Compare expression of checked genes

Lus10043446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.