Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 286 / 4e-79 AtNUP1 unknown protein AT5G20200 77 / 8e-14 nucleoporin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034137 [exp] 1417 / 0 AT3G10650 323 / 2e-92 unknown protein Lus10028861 [exp] 646 / 0 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 613 / 0 AT3G10650 405 / 4e-120 unknown protein Lus10043265 [exp] 46 / 0.0003 AT5G20200 290 / 8e-87 nucleoporin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 439 / 1e-131 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 405 / 6e-120 AT3G10650 353 / 8e-102 unknown protein Potri.008G015350 [exp] 81 / 8e-16 AT3G10650 77 / 2e-15 unknown protein Potri.018G129900 [exp] 76 / 1e-13 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.018G006200 [exp] 61 / 7e-09 AT4G31430 148 / 4e-38 unknown protein Potri.006G275200 [exp] 47 / 0.0001 AT4G31430 156 / 3e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043447 pacid=23168247 polypeptide=Lus10043447 locus=Lus10043447.g ID=Lus10043447.BGIv1.0 annot-version=v1.0 ATGGAGGACGGGGCGGCTCGAGACCGGAAAGAGACCCAGCCGTACGATGACGGCGGCGGCTATGGAAAGTTCAGGAAGCGTCCCTACCGGCGGAGGGAGA CCACTCCATATGATCGTCCAATCAGCAACCCTGGTCTCCAAAGCTCCAATGGTGGCGGTAATGGTTGGCTTTCAAAATTTGTGGATCCGGCGCAGAGGCT CATTGCCTACGGTGCTCACAAGCTTTTTGCATCTGTTTTCCGCAAGCGCCTGCCTCCCACTCAGCAGACGCAGCCTCCGGAGCCAGGGAGTAGAGGGAAG CAGAAGCAAAGGGAAGCATTTGCCGAGGATAAACAAGTCGAAACAGTACCCATGGTCTCCTCGAAGGACCTTTTAGGCTCACAGGGTGGAACTATTACAA TTCATGATGGCCCAAGTAGCTCAAATGGTGGCGGGGTTACTGATTTGGAGTCAATGTTGAAACAGAAAAGCTTTACGACGTCAGTAAGCTTTGCTCTATC CGAAAGTCACCCTCTTTCCATCCTCCAGGTGTCTTCTAATTCAGCATTGCAAAATATTAAATCATTGTTGATCTTCTGCAGGCATGAGATTGATCGGTTG ACTACCCTACTGCAGTCAAGAGTTGTTGATGTACCCGTTGCAAAAGAAGAGAAGTCTGCAGTTTTCCGTTCAAATTCATTTCTGATGCCTGGCAATGGAA AGTTCCCCGTTACTCCTGTTAAAGAGAATGCGGTTGGGAACCAGTTTGTATCAAAGCCAAGTGTCCTTGATCAAGATATTGCTTCACCTGCAGAGCTTGC AAAAGCTTACATGGGTAGCAGGCCAGCAAAACTATCTCCATCAACGTTAGGTTTTCCCAGTCAACCATGGAAGGACGATTCAGCTTTGCAGGCCAAACAG ACCTTTCGTTCAAAAGGGTCGAGTACATCGACCATTTACCAGTCTTCTGGTCTCCCTGGATCGAAAGTTAATGGTTTCATTACTCCAAGATCTCGAGGAA GATCTGCTGTTTACAGCATGGCTAGATTGCCATATTCCAGGACCCAGTCAAGCAATATGATCCAGGGTTCTGGAACTTTAAAGGACGCTCTCAGTGGCCG AGAGTTTTCATCTCAGAGTGCTTTGGATGAAAACAGATTTTCTGGAACTAGACAAGGGAATTTAAAGAGGAGAAGTTCAGTCCTAGACAATGATTTAGAG TCCATCAGTCCTATACGTAGAATTCGCCAAAAGTCAAATCTGATGTCTGCTGCAGCTGTCTCTGTCTACCGAACTCTTTCTAATTTGGATACGGAGGGGC AGCTGGCCGTGACCTCAAAGCCCGCTACAGAGGATGAACAGCCCAAGGAAAATGGTGATTATGGTATGCAGATCTCAGGTTTTGCTCCTGTCTCTACTAA ATCTAGCAAGAATGCTTCAAAGATACTCCAGCAGCTGGATGTGATGGTCTCATCAAGGGAGAAGTCCCCAGCTAAGTTGTCACCATCCATGCTTCATGGA CAAGCTCTTAGAAGTCTAGATAAAATAGATTCTTCCAAGTTTCTGGAGAGTGTCCAGGATACTAAGACAAACAGAAGGGATGCTGGTATGTCAGATGAGG GTCAATGCTCCATGCCTGAAAAGAAGGACAAGATTGAACAAAATGGTTCAACCCAAGTGGACTCTGGCGGTGACAATGTGACTGAACAAAATGGTTCAAT TGATGCCACAGCAGCCAATACCGTAATCAAATATGATGATCAGATTAGTAAGCCAAAAAATCCAGGTTTCCGTATGAGTGCCGATGACTATGAGGATTTC TTGGATATTGATGATGAAGAAATTGCTGCAAGTACTCCAACGAGGTTGGAGGATGGCGATGTGGAGCTTATTTCTAGCTCTGCTGAGAAGAAAGTTGCTG AACCTGCTACCGTGGACATGCCTCCAGTTCTTTCTGGAGCGAAAGAGACCAAAATCGTCAATGGGACACCAGTTATAGGCAATAGAGACACACTTGCATC TTTAACGCCATCATCTTCTGGAGTTATCAAGGATGCTTCCATCCCTAGCCATTCAGCCGCAGCTTTTGATAAGGCTCCTAGTGGGATTTTTAGCTACGGA GAGAAAGCTTCATTACGAACAGAGCAAAATGAACCTACTGCGAAAGCTCCGCTATTTTCTGCCGCATCTCTTTCAACATCTCCAAATGATGGTTTTGGCA TGAAATTTGGTGCTTCTTCTGGCGCCCAACCAGAAAGTTCACAGAGGATGTTTAGTGTTGCTTCTACTGTTGATCCTTCGGCGGAACAAGATAAAAATGA TAAAGATGCAGGCAGAATTGAACCTTTTGATTCTTTCCAGACAAGTAAATTTGTTCCTCCATCTGCACTGGCATCATCGCCAGCTGTAGGCATCTTCTCA TTTGGGTCTGGTTTACAAAATGTAACTCTTCCAGGGCCATCAACGAGTCAATCTGCAGCTGATAGCTCCTTATCAGTTGTTCCTAATGCTGGCCTTCCCA CATACTGCTCTGTGAATGACATCAACACTGGTAATAATAACAGAGATTCTGCAAAAACTACAGTCCCTGACCTGGGTTCATCTATTTTTAAGTTTGGGTC ACCTGCCACATCAAATTCAGTTCCTCCGCCATCCACGGATACTGGTGTTGGCACCAGCCAAACCAAAAAAGAGACCAGCTCTGGAAGTTCAATCGGTATT CACTTTGTTGATTCCAAGCCTTCAATTACAAGCCTTCACTTTAGGGATAGTTCCGCTACTGAAAACAAAAGTACTTTTGTTAGTCCATTTGGAGCTACTG GTGCTTCAAGTGCAAGCGCTGGAAGCAGCATCTTTGGCAGCGCTACTGCTGCTAGTGCAGTTAACAACAATAGCCCTCCTGGTACTTCTACTTCTGCAGT TACAAGCACAGGGGGTAGCCTTTTCAGTGCAGCTACCAGTACTAGTACTGGAAATAGCCTCTCTAATGCAACAGCTTCTAGCACAACCTCTGGAAGTAGC CCTTTTAGTTTCAGTGTCAAACCAACGATGTCGAGTGTTGCAAATCAGTCCCAAGATTTGAATAATTCTATTGGAAGCGATTTGGTAGCCACAACTGGTC TGACCTCATCAACCCAGAGTATCCCAAGTCAGTTTGGGTCTTTTATGTCTTCTCCTTTTGGGCTGCTGACTTCAAATACCTCAGCTGCTTCTGGTAAAAG TTCTACTTCTAATCTGTTTAGTTCCGGAGCTTCTTTTGGAGTGACTTCTTCCGTTCCTTCAGAAGCAAATAAGACTGTTAGCTCAACTGCTACCACACCA TCTCCACTCTTTGGTTCAAGCTGGTCAACACCTTCGTCGTCAATGTTTAGTGCTGCATCCAACTCCTCAGCTTCATCGGGTGGCTTTGTTTTCGGATCAT CAACAAGTATTGCTACTACAGGCACTTCTGTGTTGGGATCTTCTACGAATGCTACTTCCAGTTCTCCATTTTCCTTTAGTGCACCACAAGCAAATGCTCC TTTACAACCTCCATTTGGTGGCTCTAATTCATCCCTTACGTTCGCATCAACTCCATCATTTAGCTCGAGTCCGTCTGGAAACAACGATCAGATGAGGATG GAGGATAGCATGTCAGAAGACACTGTTCCGGCAACAACACCATCCGTTCCCTCATTTGCTCAGCAAACAGTGACACCCCCATCGTCCGCTGGTTTTGTAT TTGGCTCCGGAATTCCATCTGCAGGAAATCCTCAGTTTGGTTCAACAACTCCATCCGTGGGGAATCCTCAGTTTGGTTCTCCATTTCCATCAGTGGGGAA TCCACAGTTTGGGTCTATAACTCCTGCAGGAAATATGCAGTTTGGTTCTACATTTGCATCTGCTGGAAATCCACAGTTTGGTTCTGCAGCTCCTCTGACT GCAGGAAATCCACAATTTGGTTCAACAGCTGGGAACCCGTTTCAATTTGGTGGGCAACCGCAAAATGGTTCACCGTTCCAGGCTAGTGGCAGTGTGGAGT TCAATGCTGGAGGCAGCTTCTCATTAGGCGCAGGTGACAAGAGCAACAGAAGAATTGTCAAAGTGAGGAAAACACGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10043447 pacid=23168247 polypeptide=Lus10043447 locus=Lus10043447.g ID=Lus10043447.BGIv1.0 annot-version=v1.0 MEDGAARDRKETQPYDDGGGYGKFRKRPYRRRETTPYDRPISNPGLQSSNGGGNGWLSKFVDPAQRLIAYGAHKLFASVFRKRLPPTQQTQPPEPGSRGK QKQREAFAEDKQVETVPMVSSKDLLGSQGGTITIHDGPSSSNGGGVTDLESMLKQKSFTTSVSFALSESHPLSILQVSSNSALQNIKSLLIFCRHEIDRL TTLLQSRVVDVPVAKEEKSAVFRSNSFLMPGNGKFPVTPVKENAVGNQFVSKPSVLDQDIASPAELAKAYMGSRPAKLSPSTLGFPSQPWKDDSALQAKQ TFRSKGSSTSTIYQSSGLPGSKVNGFITPRSRGRSAVYSMARLPYSRTQSSNMIQGSGTLKDALSGREFSSQSALDENRFSGTRQGNLKRRSSVLDNDLE SISPIRRIRQKSNLMSAAAVSVYRTLSNLDTEGQLAVTSKPATEDEQPKENGDYGMQISGFAPVSTKSSKNASKILQQLDVMVSSREKSPAKLSPSMLHG QALRSLDKIDSSKFLESVQDTKTNRRDAGMSDEGQCSMPEKKDKIEQNGSTQVDSGGDNVTEQNGSIDATAANTVIKYDDQISKPKNPGFRMSADDYEDF LDIDDEEIAASTPTRLEDGDVELISSSAEKKVAEPATVDMPPVLSGAKETKIVNGTPVIGNRDTLASLTPSSSGVIKDASIPSHSAAAFDKAPSGIFSYG EKASLRTEQNEPTAKAPLFSAASLSTSPNDGFGMKFGASSGAQPESSQRMFSVASTVDPSAEQDKNDKDAGRIEPFDSFQTSKFVPPSALASSPAVGIFS FGSGLQNVTLPGPSTSQSAADSSLSVVPNAGLPTYCSVNDINTGNNNRDSAKTTVPDLGSSIFKFGSPATSNSVPPPSTDTGVGTSQTKKETSSGSSIGI HFVDSKPSITSLHFRDSSATENKSTFVSPFGATGASSASAGSSIFGSATAASAVNNNSPPGTSTSAVTSTGGSLFSAATSTSTGNSLSNATASSTTSGSS PFSFSVKPTMSSVANQSQDLNNSIGSDLVATTGLTSSTQSIPSQFGSFMSSPFGLLTSNTSAASGKSSTSNLFSSGASFGVTSSVPSEANKTVSSTATTP SPLFGSSWSTPSSSMFSAASNSSASSGGFVFGSSTSIATTGTSVLGSSTNATSSSPFSFSAPQANAPLQPPFGGSNSSLTFASTPSFSSSPSGNNDQMRM EDSMSEDTVPATTPSVPSFAQQTVTPPSSAGFVFGSGIPSAGNPQFGSTTPSVGNPQFGSPFPSVGNPQFGSITPAGNMQFGSTFASAGNPQFGSAAPLT AGNPQFGSTAGNPFQFGGQPQNGSPFQASGSVEFNAGGSFSLGAGDKSNRRIVKVRKTRKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	0	1
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	1.0	0.9365
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	2.4	0.9339
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	2.4	0.9338
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	2.8	0.9198
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	4.0	0.8977
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	5.5	0.9069
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	6.0	0.8936
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	6.7	0.9086
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	7.1	0.9160
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	7.1	0.8967

Compare expression of checked genes

Lus10043447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.