Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32605 235 / 2e-78 Mitochondrial glycoprotein family protein (.1) AT1G80720 82 / 3e-19 Mitochondrial glycoprotein family protein (.1) AT1G15870 72 / 4e-15 Mitochondrial glycoprotein family protein (.1) AT3G55605 65 / 3e-12 Mitochondrial glycoprotein family protein (.1) AT5G05990 58 / 5e-10 Mitochondrial glycoprotein family protein (.1) AT5G02050 58 / 8e-10 Mitochondrial glycoprotein family protein (.1) AT4G31930 56 / 2e-09 Mitochondrial glycoprotein family protein (.1) AT2G39795 55 / 6e-09 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034136 [exp] 364 / 3e-129 AT4G32605 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 61 / 5e-11 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 59 / 2e-10 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 59 / 3e-10 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 59 / 3e-10 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 58 / 6e-10 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 56 / 3e-09 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 54 / 3e-08 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 52 / 3e-08 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244500 [exp] 258 / 2e-87 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 258 / 5e-87 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 64 / 3e-12 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 60 / 1e-10 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 54 / 2e-08 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 52 / 6e-08 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 51 / 1e-07 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 49 / 6e-07 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5) Potri.016G102200 [exp] 49 / 6e-07 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10043448 pacid=23168359 polypeptide=Lus10043448 locus=Lus10043448.g ID=Lus10043448.BGIv1.0 annot-version=v1.0 ATGTCTGCCATCTGGAGGAGTCTGCTACAACATTCTAGAGCTGCGCAGCCATGGCGCTCAATCCCTTCCCGCTCCTCTTCCTCTTCCTTGCCGGCCAATA TATCCTCCGCCGTCAACTCCATGTTGCTCCGCTCCCTCAAGGAGCACTACCTCGACGTCTCTAAAATGAATCCTCCTCCGAAAGTTAGCCCTCCGCCAGG GTTCACAGTGTTGAAAGGGGCTCTGGATGGAAACGATGGCCCAGTCCTCACTAAGACTTACGGCAACGAAGAAATCAAGATTTCTGTGATGAGATTGTCC AACATAATACCTGGTGGGGGAGGCGGAGGAGGAGATGATGAGGATGATATTAATCAATTGTTCCTCCATCTTCAAGTTTCCAAGCCTGACCAGCATAAGT CTCTGCATTTCCTATGTGGACTGTACCCGGATGCCCTAGGTATCCACTCTGTTTCGCTGAGGCCAAAGCTTGAAGCTTCAGGTTTTTTCCAGGTTCCTTC GTCTTACAATGGCCCTGTTTTTGGGGATTTGGATCAGCGGATGAGAGATGCATTTCACGACTTTGTGGAGGAGCGAGGGGTCAACGAAAATCTGTTTGCT TTTCTTCAAGCGTGGTTGTATGTGAAGGATCACAAGAACCTCCTACGTTGGTTCAAAACAGTGGGATCGCACATAAACGAGAAACCAGTTACAGATTCAT AG
AA sequence Show only first row Show all	>Lus10043448 pacid=23168359 polypeptide=Lus10043448 locus=Lus10043448.g ID=Lus10043448.BGIv1.0 annot-version=v1.0 MSAIWRSLLQHSRAAQPWRSIPSRSSSSSLPANISSAVNSMLLRSLKEHYLDVSKMNPPPKVSPPPGFTVLKGALDGNDGPVLTKTYGNEEIKISVMRLS NIIPGGGGGGGDDEDDINQLFLHLQVSKPDQHKSLHFLCGLYPDALGIHSVSLRPKLEASGFFQVPSSYNGPVFGDLDQRMRDAFHDFVEERGVNENLFA FLQAWLYVKDHKNLLRWFKTVGSHINEKPVTDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32605			Mitochondrial glycoprotein fam...		Lus10043448 [exp]	0	1
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	3.5	0.9139
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	7.3	0.8957
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	10.6	0.8896
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	15.5	0.8921
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10001350 [exp]	19.5	0.7953
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	22.2	0.8812
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	22.2	0.8678
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	24.0	0.8535
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	25.3	0.8310
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10006130 [exp]	25.5	0.8466

Compare expression of checked genes

Lus10043448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.