Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48410 394 / 6e-137 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 389 / 4e-135 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 359 / 7e-124 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 352 / 7e-121 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 345 / 9e-118 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 333 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 328 / 1e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 274 / 2e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03230 262 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 261 / 1e-85 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034135 [exp] 681 / 0 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 447 / 4e-158 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 417 / 2e-146 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 410 / 1e-143 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 413 / 2e-143 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 405 / 6e-142 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 405 / 1e-141 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 399 / 1e-139 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 378 / 1e-130 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 453 / 9e-161 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 446 / 5e-158 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 424 / 2e-149 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 417 / 2e-146 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 416 / 1e-145 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 363 / 3e-125 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 354 / 6e-122 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 322 / 4e-109 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 137 / 3e-36 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 136 / 6e-36 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10043449 pacid=23168302 polypeptide=Lus10043449 locus=Lus10043449.g ID=Lus10043449.BGIv1.0 annot-version=v1.0 ATGGAAAGAGGTATTGCATTTGCAGGAGTGGTTTTGATAGGGTTACTGTCATGGGCGTACAACTCCACCTATCCACCACCTCCCAAGATTTGCAGTACCC CACTTACACATCCAAGGATTAAGCTCAGAGATGGAAGGCACTTGGCTTTTAAACCTCAAGGAGTCCCCAAACATATTTCGAAATTCAATCTCATTTCCAT CCATGGCACCTCCTCTTCCCTTCATCAAACCCTTGGTTCCCCCCAAATCTGGGAGGAGCTAGGAGTTCACTTTGTGTCCTTCGACAGACCCGGTTACGGA GAGAGCGATCCGGACCCGAAGCGGAGCCCCAAGAGCTTGGCTTTGGATGTTGAAGAGCTTGCTGATCAATTGGAACTTGGCCCCAAATTCTATGTCGTTG GCTTCTCCATGGGTGGTCAAGCTGTATGGGGTTGCCTCAAGTACATCCCTCACAGGCTAGCAGGTGCAGCAATGATTGCACCTGTTGTGAACTACTGGTG GCCTGGATTCCCAGCAGACTTATCCAAGCAAGCTTACCAACTCCAGCTCTTGCCCGATCAATGGGCGTTACGGATTTCTCATTACACTCGCTGTCTCACC TACTGGTGGAACTCTAGGAAGTGGTTTCCTGGATCAGCAGTTTTGGCTGGGAATCCTCAAGTTTTCTCTCCCCAGGACTTGCATATACTGTCCTCCATGC CAAGGGACCAATTGACCCAAGTCAAGGGATACGCGATTCAGCAAGGTGAATTCGAGTCGTTGCACCGGGACCTGATGGTTGGATTCGGGAGCTGGGAATT CGACCCCATGGATTTGGAGAATCCATTTCCAGAGAGCGAAGGTGGGTCGCCGGTCCATGTGTGGCATGGTGATGAGGACAGAATGGCGCCTGTGATGTTG CAGCGTTACATTGCGAGCAGACTTCCATGGATAAAGTATCATGAGTTGCCTGGTGCTGGACACTTGTTCGCTTTTGTACCAACCAACGGTGAAGCCATTT TAAAGTCTCTGTTACTTGGCAACAACTAG
AA sequence Show only first row Show all	>Lus10043449 pacid=23168302 polypeptide=Lus10043449 locus=Lus10043449.g ID=Lus10043449.BGIv1.0 annot-version=v1.0 MERGIAFAGVVLIGLLSWAYNSTYPPPPKICSTPLTHPRIKLRDGRHLAFKPQGVPKHISKFNLISIHGTSSSLHQTLGSPQIWEELGVHFVSFDRPGYG ESDPDPKRSPKSLALDVEELADQLELGPKFYVVGFSMGGQAVWGCLKYIPHRLAGAAMIAPVVNYWWPGFPADLSKQAYQLQLLPDQWALRISHYTRCLT YWWNSRKWFPGSAVLAGNPQVFSPQDLHILSSMPRDQLTQVKGYAIQQGEFESLHRDLMVGFGSWEFDPMDLENPFPESEGGSPVHVWHGDEDRMAPVML QRYIASRLPWIKYHELPGAGHLFAFVPTNGEAILKSLLLGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	1.0	0.9587
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	2.0	0.9517
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	2.8	0.9448
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	6.0	0.9374
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	6.0	0.9466
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	6.7	0.9445
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	6.8	0.9237
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	7.1	0.9225
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	7.3	0.9396
					Lus10005397 [exp]	7.7	0.9372

Compare expression of checked genes

Lus10043449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.