Plant FIBer expression Database

Lus10043452 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09770 510 / 3e-171 MYB ATCDC5, AtMYBCDC5 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034133
[exp]
926 / 0 AT1G09770 1207 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G046300
[exp]
672 / 0 AT1G09770 1131 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1)
Potri.019G018400
[exp]
670 / 0 AT1G09770 1168 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11831 Myb_Cef pre-mRNA splicing factor component
Representative CDS sequence
>Lus10043452 pacid=23168301 polypeptide=Lus10043452 locus=Lus10043452.g ID=Lus10043452.BGIv1.0 annot-version=v1.0
ATGGGTTATGCTAGTGATCTCATTGCTGAGAGTGAGGAACTAACAGGGGGGAGTGGTGCAACACGGGCACTTCTAGTAAACTATGCCCAGACACCACATC
AGGGAATGACTCCCCTGCGTACCCCACAGAGAACTCCTGCTGGTAAGGGTGATGCCATTATGATGGAGGCTGAAAACCTTGCTCGGTTGAGAGAGTCACA
GACACCATTATTAGGGGGAGATAATCCAGAGTTGCATCCCTCAGATTTCTCGGGGGTGACTCCAAAGAAGCGGGAAATCCAAACTCCAAACCCGATGTTG
ACTCCTTCAATGACTCCGTCAATGACTCCTTCAATGACTCCGGGAAGAGCTGGTGTTACTCCTAGAATTGGCATGACGCCATCACGTGATGGATATTCCT
TTGCTATGACTCCAAAAGGGACACCCATTAGGGATGAACTCCACATAAATGAAGACATGGATATGCATGATAGTGGTAAGCTCGAGCGAAGAAAACAAGC
TGATCTGAGGGAGAACCTGCGAACTGGCCTTAGTAATTTGCCACAGCCCAGGAATGAATACCAGATTGTTGTGCAACCACCTCCAGAAGATTCTGAAGAA
CCAGAAGAGAAGATCGAAGAGGATATGTCTGATAGAATGGCCAGAGAAAAGGCTGAGGAGGAAGCACGGTTGCAGGCATTGCTTAGGAAGCGATCAAAAG
TCCTGCAAAGGGAGCTACCAAGGCCCCCTGCTGCTTCTTTGGAATTGATTAGAAGTTCTTTGCTGAGAGCTGATGGAGACAAGAGTTCTTTTGTTCCTCC
AACGGTAATTGAACAAGCTGATGAATTAGTTAGGAAAGAGCTTTTAAGTTTGTTGGAGCATGATAATGCAAAGTACCCACTTGAAGAGAAACAAAGCAAG
GAGAAGAAGAAAGGTACCAAGCGTTCAGCAAATGGTACTGCTCCTTCTATCCCTATAATAGAGGAGTTTGAAGAGGATGAGCTGAAAGAGGCTGATTCTT
TCATAAGGGCAGAGGCTCAACATGTTCGTGTGGCTATGGGGCACGAAGAAGAGTCTCTTGAAGAATTTGTTGATGCACATAAGACTTGCCTGAATGATCT
AGTATACTTTCCTACTCGAGCTGCCTATGGTCTCTCAAGTGTTGCTGGAAATGTAGAGAAATTAGCTGCTTTGCAGTATGAGTTTGAGAACGTCAAGACA
AGGTTGGAGGCCGAAAGGGAGAAGGCATTACGCCTTGAAAAGAAGGTCAATGTGCTGACACAAGGTTATCAGATACGTGCCGAAAGACAGCTTATTCCGC
CAATTGAGTCGATCTTAAAGCAAATAGACACTGCTAGAACGGAGTTGGAATGCTTCCAAGCATTACAAAAGCAAGAGCAATTAGCTGCATCTCATAGAAT
CAATGGTCTCTGGGAGGAAGTACAGAAGCAGAAGGAACTGGAGAAAACTCTTCAGAAACGTTATGGAGATCGTGCATCTGAGCTAGAAAGGATGCAACTG
CTTGCCAATCATTACAGAGAACAAGCCAAACAAGAAGAGATTGCCGCCGGGAACCGGGCTGTTGAATTGGCTTCTGTGGATGCTGCTGATCAAGTTGCCA
TGCCAAATACAGAAAGTTCCGAGCTAATGTCCACGGAAGGTGCAGCCCCTGCTGATGAAATTGTACAGAAAGAGATTAACCATGGCCCTGCAGATTCTGA
ACCCGCTATGGATATCGATTCAGGTGCTGAACATCTGAAGGGTGGTAGTGTAAACTCATCCGATCATGCGGCTTCTGGCCATGGCAATCCAGATGCAGAT
GCAGAACTAGTTGTCAGCACTGCAGTTGATGGTGCAACAATTTCCGAGGATCCGAAGCAGGGCTTAAACGAGCCAAACCCTAGTGGTGGTGAAAAAGCAG
TGACTGGTGGTGGTGAAAAAGCAGTGACGGAGACAGATGCTGCAAAGGAAGAGTGA
AA sequence
>Lus10043452 pacid=23168301 polypeptide=Lus10043452 locus=Lus10043452.g ID=Lus10043452.BGIv1.0 annot-version=v1.0
MGYASDLIAESEELTGGSGATRALLVNYAQTPHQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKREIQTPNPML
TPSMTPSMTPSMTPGRAGVTPRIGMTPSRDGYSFAMTPKGTPIRDELHINEDMDMHDSGKLERRKQADLRENLRTGLSNLPQPRNEYQIVVQPPPEDSEE
PEEKIEEDMSDRMAREKAEEEARLQALLRKRSKVLQRELPRPPAASLELIRSSLLRADGDKSSFVPPTVIEQADELVRKELLSLLEHDNAKYPLEEKQSK
EKKKGTKRSANGTAPSIPIIEEFEEDELKEADSFIRAEAQHVRVAMGHEEESLEEFVDAHKTCLNDLVYFPTRAAYGLSSVAGNVEKLAALQYEFENVKT
RLEAEREKALRLEKKVNVLTQGYQIRAERQLIPPIESILKQIDTARTELECFQALQKQEQLAASHRINGLWEEVQKQKELEKTLQKRYGDRASELERMQL
LANHYREQAKQEEIAAGNRAVELASVDAADQVAMPNTESSELMSTEGAAPADEIVQKEINHGPADSEPAMDIDSGAEHLKGGSVNSSDHAASGHGNPDAD
AELVVSTAVDGATISEDPKQGLNEPNPSGGEKAVTGGGEKAVTETDAAKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09770 MYB ATCDC5, AtMYBCD... ARABIDOPSIS THALIANA MYB DOMAI... Lus10043452
[exp]
0 1
AT5G53480 ARM repeat superfamily protein... Lus10034318
[exp]
8.5 0.8915
AT5G64420 DNA polymerase V family (.1) Lus10037435
[exp]
11.4 0.8847
AT3G55220 AtSAP130b, SAP1... Arabidopsis thaliana spliceoso... Lus10040321
[exp]
12.0 0.8832
AT3G15120 P-loop containing nucleoside t... Lus10013677
[exp]
13.9 0.8492
AT3G55220 AtSAP130b, SAP1... Arabidopsis thaliana spliceoso... Lus10023443
[exp]
17.7 0.8801
AT5G27240 DNAJ heat shock N-terminal dom... Lus10033983
[exp]
23.7 0.8570
AT5G39840 ATP-dependent RNA helicase, mi... Lus10033404
[exp]
25.6 0.8762
AT5G27240 DNAJ heat shock N-terminal dom... Lus10037161
[exp]
27.4 0.8574
AT3G48430 JUMONJI JMJ12, REF6 Jumonji domain-containing prot... Lus10043332
[exp]
40.5 0.8592
AT3G48430 JUMONJI JMJ12, REF6 Jumonji domain-containing prot... Lus10019482
[exp]
45.9 0.8578

Lus10043452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.