Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20780 84 / 2e-16 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 72 / 1e-12 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G68940 69 / 9e-12 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT4G16490 47 / 4e-05 ARM repeat superfamily protein (.1) AT3G46510 44 / 0.0004 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034132 [exp] 1346 / 0 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 233 / 4e-64 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 172 / 3e-44 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 133 / 1e-31 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 117 / 1e-26 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 88 / 2e-17 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 55 / 3e-07 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10024899 [exp] 54 / 4e-07 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10029112 [exp] 52 / 4e-07 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024600 [exp] 836 / 0 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 832 / 0 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 284 / 5e-82 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 259 / 3e-73 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 223 / 9e-61 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 155 / 2e-38 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.002G007800 [exp] 124 / 4e-29 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 124 / 8e-29 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 90 / 4e-18 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 57 / 5e-08 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10043453 pacid=23168383 polypeptide=Lus10043453 locus=Lus10043453.g ID=Lus10043453.BGIv1.0 annot-version=v1.0 ATGGTTTCTGAAATTTCAGATGCATCATCAGAGGGTGATCAGATTGTCTCCGAGTTTCAGCTCCTGGTGGAGAAGTTCGACCCAGTCCTGGTTGCAATCG GCCAGTCAGCGGTTGATAAGGAACCAGTTCGAGAGGCGATTGAGTCACTCCAGAGAGAGCTTGCAAATGCTAAGAGCTTGATCAAGAGTGGTGGGTCAAG ATCGGCCATACCCACAAAGCAAGTTGAGGAAATGACTCAAGTTCTAGGCAGGTCTTTAGGCCTTGTCTTGTTTGCGGGATTTGATCTTCCTGTGGAGATG AAAGAGGGTATTGCACAACTTCATCGAGAGGTAATGCACCGCAAGTTTGCTACAACAAGTTTAAGTTCTAGTCCAAGTCATAGTCATATCAGTTCATCTG CTCCTAATCCCAGTCCAATGTCGAGTCAAGAATTCAGTGCTTTCGTCTTTGGATCGGAAATTGTAGAGCAAGGTGCAGACTTAAGCACCGAGGATGTTGC CTTGCAACTCAAGTATGGAGATGATGAGCAATTCCTGCTTGCGCTATTGGGGTTGCAAAACTTGATCAGGGATGAAGTGGTGAATAGAGAGTGGATTGAT GATGAAGGTGTTCTTGTAAGCTTGTTCAGCCGGCTGGGTTCAACCAAGGTTGGAAATCGATTGGCTACTATTCAAACCATGAGAAACCTTGCTTTGAGGT ATCCTGAACTCAAGGACAGAATGGGAGATGCTGGGAATTTGGCATTGCTGGTGAAATCATTGATGAGAAATGTGGATGAATGTAGGGAAGCTGTGGGATT GTTGCTTCAACTCTCTAAAGTTTCGTCAGTGAGGCGAAGAATCGGAAAAGTTCAAGGATGTATCGTCTTGTTAGTTGCCACGCTGAAGAGGGATGATTCA CTAGCCTCTGCTGATGCAGCCGAGCTATTGGATTCATTGTCAAGCAATGCGCAAAATGCCCTTTACATGGCTGAGGCAGGCTACTTCAAGGCCTTGGTCC ACCACCTCAAAGAAGGTTCAGATATGAGTAAAATTCTAATGGCAACATCCCTTTCAATAATGGAGCTTACAGATCAAACCAGGTCTTCCATCGGGGGAGA CGGAGCAATCGAACCCTTAGTGAAGATGTTCAAAACTGGGAAATTTGAAGCTAAGTTGGCAGCTCTAAATGCATTGCACAATTTGTCTCGGCTGGGAGAT AACGTACGACGTTTGATCAGTTCAGGAATTGTAGTACCTTTGCTTCAGCTACTCTTCTCAGTGACTTCGGTCCTCATGTCCCTACGAGAACCGGCTTCAG CGATACTAGCTAGGATCGCTGAATCTGAGTCGATTCTGATCAACCAGGATGTAGCTCAGCAGATGCTTTCTCTGTTGAATCTATCAAGTCCAGTGATCCA GTGTCACCTCCTGAAAGCCCTTACAAACATAGCTTCCCACTCCAGCGCGTCCGATGTTCGAGAAAAGATGAAAGAAAATGGTGCCATCCACCTTGTGTTG CCATTCCTGACTGAAACAAACGTCCATATGAGAGCTGCTGCTTTGAACTTTCTCTATACCCTCTCTAAAGATTCTGCAGAAGATTTGATGGAACATCTGG GGGAATATCACCTGGGAAACATTATCAATCTCATCTCATCATCTGGATCTGAAATCGAAAAGGCTGCTGCTATTGGAATACTGAGCAACATCCCCGTTGG TGACAAGAAAGCTACAGATATCCTTAGAAAGTCTGATTTGCTGCCAATTCTCATCTCAATGATGATGACAAGTTCCTCTAGTAGTAGATCGGAACTATTA GCAGAGAGCATTGCGGGGGTATTCATTCGATTTACGATGCCTTCTGATAAGAAACTGCAGCTTCTTGCAGCTGAACTGGGAGTGATCCCTATACTTGTGA AGCTGTTGTCAAGTGGTTCTTCAGTGGCAAAGCTACGAGTTGCAACTTCACTAGCACAGTTATCTCAGAACACTATAGTTCTTAGCAGGTCCAGAATATC CAAGTGGAAATGCATGCCTCCATCTGGAGAAGCAGTCTGTAAAGTCCACGATGGCTGTTGCTCGGCCAAGAGGACATTTTGCTTGGTGAAGGCCGGAGCC ATTCCTCCATTGATCCGGATACTGATGGAAGAAGAGGGAGAGGAGACAGAAGTAGAAGCTGCGGTACTGAGTTGTCTTGCAACTCTCTTACATGATGAGA CATGGGAGAAGGGAAGTAGCTACGTTGCAGAAATGTCTTCAGGAGTTCAGGGGATAGTTAGAGCATTGGAATGCAAAGATGTAAAGGCTCAGGAGAAAGC GTTGTGGATGTTGGAGAGGATATTCAGGAACGAGGCACTGAGGGCGGAATATGGTGGGAGTGCTCAGGTGGTGCTTATCGATCTTGCGCAGAACGGCAAT CCGAGGTTGAAATCAGCCATTGGTAAAGTGTTGGCACAGCTTGAGCTCCTGCAATTCCAGTCTAGCTATTTCTAG
AA sequence Show only first row Show all	>Lus10043453 pacid=23168383 polypeptide=Lus10043453 locus=Lus10043453.g ID=Lus10043453.BGIv1.0 annot-version=v1.0 MVSEISDASSEGDQIVSEFQLLVEKFDPVLVAIGQSAVDKEPVREAIESLQRELANAKSLIKSGGSRSAIPTKQVEEMTQVLGRSLGLVLFAGFDLPVEM KEGIAQLHREVMHRKFATTSLSSSPSHSHISSSAPNPSPMSSQEFSAFVFGSEIVEQGADLSTEDVALQLKYGDDEQFLLALLGLQNLIRDEVVNREWID DEGVLVSLFSRLGSTKVGNRLATIQTMRNLALRYPELKDRMGDAGNLALLVKSLMRNVDECREAVGLLLQLSKVSSVRRRIGKVQGCIVLLVATLKRDDS LASADAAELLDSLSSNAQNALYMAEAGYFKALVHHLKEGSDMSKILMATSLSIMELTDQTRSSIGGDGAIEPLVKMFKTGKFEAKLAALNALHNLSRLGD NVRRLISSGIVVPLLQLLFSVTSVLMSLREPASAILARIAESESILINQDVAQQMLSLLNLSSPVIQCHLLKALTNIASHSSASDVREKMKENGAIHLVL PFLTETNVHMRAAALNFLYTLSKDSAEDLMEHLGEYHLGNIINLISSSGSEIEKAAAIGILSNIPVGDKKATDILRKSDLLPILISMMMTSSSSSRSELL AESIAGVFIRFTMPSDKKLQLLAAELGVIPILVKLLSSGSSVAKLRVATSLAQLSQNTIVLSRSRISKWKCMPPSGEAVCKVHDGCCSAKRTFCLVKAGA IPPLIRILMEEEGEETEVEAAVLSCLATLLHDETWEKGSSYVAEMSSGVQGIVRALECKDVKAQEKALWMLERIFRNEALRAEYGGSAQVVLIDLAQNGN PRLKSAIGKVLAQLELLQFQSSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	1.0	0.9338
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	2.4	0.8962
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	6.9	0.8557
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	7.7	0.8310
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	8.9	0.8171
AT1G10660			unknown protein		Lus10029133 [exp]	10.5	0.8629
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10026801 [exp]	12.0	0.8012
AT5G61040			unknown protein		Lus10021155 [exp]	13.9	0.8278
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	14.0	0.8048
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	14.2	0.8211

Compare expression of checked genes

Lus10043453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.