Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04850 383 / 6e-136 VPS60.2 SNF7 family protein (.1.2) AT3G10640 378 / 5e-134 VPS60.1 SNF7 family protein (.1.2) AT4G29160 65 / 1e-12 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 58 / 7e-10 VPS32, SNF7.2 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034131 [exp] 432 / 1e-155 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2) Lus10008953 [exp] 408 / 6e-146 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2) Lus10028867 [exp] 408 / 8e-142 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10032705 [exp] 51 / 2e-07 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10012921 [exp] 49 / 1e-06 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242700 [exp] 386 / 4e-137 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2) Potri.008G018300 [exp] 378 / 4e-134 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2) Potri.018G069900 [exp] 48 / 2e-06 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 42 / 0.0001 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1) Potri.006G154000 [exp] 40 / 0.0009 AT4G29160 224 / 3e-74 SNF7 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10043454 pacid=23168129 polypeptide=Lus10043454 locus=Lus10043454.g ID=Lus10043454.BGIv1.0 annot-version=v1.0 ATGCAGAGAATCTTCGGCTCTAAGAAGAACAAGGATCCTCCCCCGTCCGTCTCCGATGCCTCCGATAGGATCAATAAAAGGGGAGATAATGTGGAGGAGA AGATAAAAAAGCTGGATGCTGAACTCAACAAATACAAAGAACAGATTAAGAGAACACGACCTGGGCCTGCTCAGGAGGCTGTTAAAGCACGCGCCATGAG GGTTCTTAAGCAGAAGCGCATGTATGAGGGTCAGCGTGATATGCTTTACAACCAAACATTTAACCTTGACCAAGTTTCTTTTGCTGCTGAGGGCATTAAA GATGCTCAGCAAACTATGTCAGCTCTGAAGTCTGCAAATAAAGAGTTGAAAGGGATGATGAAAACTGTTAAGATTCAAGATATAGATAACTTGCAAGACG AGATGATGGACCTGATGGAAGTTAGTAGTGAAATCCAAGAGACCCTGGGTAGAAGTTATAATGTGCCCGATGATATTGATGAGGATGAACTCATGGGTGA ACTTGATGCTTTGGAGGCAGACATGGGATTGGAGACTGAAGGTGAAGGTGTGCCGTCGTATTTGCAACCTGATAAGGAATCAGATCTGGATGCAGAATTG AACTTACCTTCAGCACCCATGGGCCATGCTGGTAGACCTCAGGTTAACATCTCATCTTATGGCTTCTTTATTCAATTTGTCAGTAAGCATCAAGAAATTG TCAGTAAGCATCAAGAAAGCAGTGAAACCAGTTCTTGTCATAATAGAAATGAGTCACCGATCGTGCTGTTCATTGTTCACCAACAACACTGTAGAGATGG TAGTTGCACTTGCGCATAG
AA sequence Show only first row Show all	>Lus10043454 pacid=23168129 polypeptide=Lus10043454 locus=Lus10043454.g ID=Lus10043454.BGIv1.0 annot-version=v1.0 MQRIFGSKKNKDPPPSVSDASDRINKRGDNVEEKIKKLDAELNKYKEQIKRTRPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIK DAQQTMSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMEVSSEIQETLGRSYNVPDDIDEDELMGELDALEADMGLETEGEGVPSYLQPDKESDLDAEL NLPSAPMGHAGRPQVNISSYGFFIQFVSKHQEIVSKHQESSETSSCHNRNESPIVLFIVHQQHCRDGSCTCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	3.7	0.7423
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	6.0	0.7313
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	6.8	0.7342
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	8.2	0.7290
AT3G54880			unknown protein		Lus10037957 [exp]	8.3	0.6632
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	11.5	0.6687
AT4G37810			unknown protein		Lus10011591 [exp]	13.4	0.7192
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	13.4	0.6712
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	15.5	0.6765
					Lus10025147 [exp]	21.2	0.6359

Compare expression of checked genes

Lus10043454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.