Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54510 829 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 425 / 3e-139 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 350 / 6e-110 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G69450 347 / 8e-109 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G10090 325 / 4e-100 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G21620 295 / 5e-89 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 289 / 1e-86 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G32090 287 / 1e-85 early-responsive to dehydration stress protein (ERD4) (.1) AT4G22120 281 / 1e-83 ERD (early-responsive to dehydration stress) family protein AT1G11960 280 / 4e-83 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005223 [exp] 391 / 8e-126 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10037139 [exp] 372 / 2e-118 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10004550 [exp] 369 / 7e-117 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004597 [exp] 367 / 2e-116 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10030431 [exp] 360 / 4e-114 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10010365 [exp] 324 / 3e-100 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10030024 [exp] 300 / 1e-90 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 297 / 8e-90 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 295 / 5e-89 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G200900 [exp] 929 / 0 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 439 / 3e-144 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 393 / 2e-126 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.010G164100 [exp] 378 / 6e-121 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 372 / 2e-118 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G099800 [exp] 290 / 1e-86 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 288 / 4e-86 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 286 / 2e-85 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 282 / 8e-84 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006100 [exp] 280 / 3e-83 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06772 [flax] [poplar] LtrA Bacterial low temperature requirement A protein (LtrA) CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10043455 pacid=23168068 polypeptide=Lus10043455 locus=Lus10043455.g ID=Lus10043455.BGIv1.0 annot-version=v1.0 ATGAAACTAGAGAGTTTAATTGCGTCGGCGGCGATAAACTTCGGCCTGGCCTTCACCATCCTCTTCCTCTTCTCAATCCTCAAGAAACAGCCTTCCAATG CCCTCATTTACTACGCCCGCCCACTCTCCCTCTCCCGCCGCCGACCTGATTCCCCACTTCCCCTCCTCTACCGATTCCTCCCCTCCCTCGCCTGGATTCG CAACTCTTTCCGTCTCTCCGAGGAGGAAATCCTTCACATTCACGGCCTAGACGTCCTCGTTCTCTTCCGTCTATTCAAATTCGGTATCAATTTCTTCGGA TTTTCTTCTCTTCTCGGTATGGCGGTTCTCGTCCCTGTTAATTACGGAGGCGGCGATGACGATGCTTTCAAAATCCGCCATTCCATGGATCCTTTCTCCA TTTCCAATGTCCCTACTGGTTCCGATAGGCTGTGGGTGCATTTCACTTGCTTGTGCCTCATTTCCATTTATGGATTATTCCTGCTTTATAAGGAGTATGG CATGATCATGAATAAAAGGGTCCATCGACTTCGAATCTTAAGGCCTCAGCCTGAACAGTTTACTGTTCTCGTCAGACGAGTTCCTTATTGCTCTGAGCAT GGGGCTTATGGCTGTGCCGTTGATCACTTCTTCTCCAAGTATTATCCTCAGAGTTACTGTTCTTGCCAAATGCTTTATGACTCTAAGGAAATACCACAGA AGCAGGCAAATCACATTGCAGATGAGATTAACAGATTGAGAGACAAGTCAACAGTCAGGAAAAAAGGGAAAGATAGTTTGCTTCCAAACGTGTCCCAAGA ACATGGGAAAATAACGCAGTATGAGGAAAAGCTTGAAGAACTGCATCATCAGATTCGTGAGTTGAAGAGTAAAAATGTGCTGAGTGGAAAGGAGTTACCT GTCGCCTTTGCAACATTCAAGAATCGTAGGAGTGCTTCATTGGCAGCCCAGTCTCAGCAGCACTCACATCCATTAGTGTGGGTCACTGAGAGGGCTCCTG AACCAAGGAATGTCTCATGGAGAAGTCTGGCAATTCCACTCCGTATGTTGCCATTTATCAAAGTGGCTGTGGTGGTCTTGGCAACCCTCCTTACCCTGTT CTTTGCAGTCATAGTGACTGGTGTTCAAGGAATAGCCAAATTTGACAAGTTAAAGAAATGGTTTCCTCCTGCCATGGCTGTTGGACTGATCCCAGGATTA AGCTCTATCTTGACGGGGTATCTCCCAAGTGCTGTCCTCAAGGGATGTGAATATCTGATCCCGTTTGCGATGCTTGGTATGTCTAAAATGGGCGGGTCCA TCTCAAATAGCAAGGAAGAGATAAAAGCTTGCAATATGGTATTTTATTTTCTAGTCGGAAATGTGTTCTTCCTGAGTTTAATATCAGGTTCCTTGCTTGA TGAGATCGGAGCTTCATTCAGTCATCCTAGCAATTTCCCTAGCCACCTTGCAAGTGCTGTTTCTGCTCAGGCAAGCAACTTATTCCAGTCTACTCTAAAT GTTCACTACGACTCATCGTATGCTGCTGATTTCTTTGTGACATACGTTTTAACGGATGGACTGTCTGGATTTTCTTTGGAGATCCTTCAGCTTGCCTTGC TTACATGGGATTGTATAGTGTTGCACACATGGGGTAGAGGGAAGGAGGAGAATCCTTATCTCTTCTCATTGCCCTTTTTCAGAGTCATCCCTTCAGTCTC CCTTTCTATACTCATTGGTGTCGTCTATGCTGTCATTGCTCCGCTGCTGCTTCCGTTCCTTGTTGGATACTTTTGCCTTGGCTATGTCGTCTACATGAAT CAGATTCAAGATGTGTACGAGACTACCTATGAAACATGTGGGCAGTTCTGGCCGTACATTCATCACTATATAATCGTCGGAATCGCTCTGATGCAAGTCA CTATGATTGGTCTGTTTGGCCTGAAATCCAAACCCGCAGCTTCAATCGCTACCATCCCACTCTTGGTGCTTACTTTGGTGTTCAACGAATACTGCAAGAT GCGCTTTCTTCCCACTTTTCGCCATAATCCCATCCAGGATGCTGCTGAACTTGACGAATTAGACCAGAAGAATGGCGAGTTAGAAACCAATTATCAAAAT GCTAGCACCGCCTATGAGCAACCAAGTTTACGGGCAGTTAACATCGCGGCACCAGAGCCAAGTTACACAGGTCCTTCTGTGTAA
AA sequence Show only first row Show all	>Lus10043455 pacid=23168068 polypeptide=Lus10043455 locus=Lus10043455.g ID=Lus10043455.BGIv1.0 annot-version=v1.0 MKLESLIASAAINFGLAFTILFLFSILKKQPSNALIYYARPLSLSRRRPDSPLPLLYRFLPSLAWIRNSFRLSEEEILHIHGLDVLVLFRLFKFGINFFG FSSLLGMAVLVPVNYGGGDDDAFKIRHSMDPFSISNVPTGSDRLWVHFTCLCLISIYGLFLLYKEYGMIMNKRVHRLRILRPQPEQFTVLVRRVPYCSEH GAYGCAVDHFFSKYYPQSYCSCQMLYDSKEIPQKQANHIADEINRLRDKSTVRKKGKDSLLPNVSQEHGKITQYEEKLEELHHQIRELKSKNVLSGKELP VAFATFKNRRSASLAAQSQQHSHPLVWVTERAPEPRNVSWRSLAIPLRMLPFIKVAVVVLATLLTLFFAVIVTGVQGIAKFDKLKKWFPPAMAVGLIPGL SSILTGYLPSAVLKGCEYLIPFAMLGMSKMGGSISNSKEEIKACNMVFYFLVGNVFFLSLISGSLLDEIGASFSHPSNFPSHLASAVSAQASNLFQSTLN VHYDSSYAADFFVTYVLTDGLSGFSLEILQLALLTWDCIVLHTWGRGKEENPYLFSLPFFRVIPSVSLSILIGVVYAVIAPLLLPFLVGYFCLGYVVYMN QIQDVYETTYETCGQFWPYIHHYIIVGIALMQVTMIGLFGLKSKPAASIATIPLLVLTLVFNEYCKMRFLPTFRHNPIQDAAELDELDQKNGELETNYQN ASTAYEQPSLRAVNIAAPEPSYTGPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	0	1
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	2.4	0.8352
AT1G29120			Hydrolase-like protein family ...		Lus10001893 [exp]	3.9	0.8124
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	4.2	0.7774
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	4.9	0.7990
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	5.3	0.7855
					Lus10024691 [exp]	6.5	0.8026
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	8.0	0.8337
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	8.5	0.7867
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	8.8	0.8211
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	16.2	0.8173

Compare expression of checked genes

Lus10043455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.