Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 1843 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 1841 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 145 / 7e-38 TRAF-like family protein (.1) AT3G58270 135 / 2e-34 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58340 125 / 3e-31 TRAF-like family protein (.1) AT3G58360 119 / 2e-29 TRAF-like family protein (.1) AT3G58210 120 / 4e-29 TRAF-like family protein (.1) AT3G58260 114 / 4e-27 TRAF-like family protein (.1) AT2G05420 108 / 2e-25 TRAF-like family protein (.1) AT3G58350 108 / 2e-25 RTM3 RESTRICTED TEV MOVEMENT 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034130 [exp] 2115 / 0 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10008949 [exp] 2038 / 0 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 1828 / 0 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10028871 [exp] 963 / 0 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 215 / 3e-63 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 150 / 1e-38 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 146 / 3e-35 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027030 [exp] 120 / 2e-29 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10029686 [exp] 115 / 8e-26 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012600 [exp] 2011 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 2009 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 1924 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 1897 / 0 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.005G179500 [exp] 115 / 9e-26 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.002G081600 [exp] 112 / 8e-25 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.001G130700 [exp] 106 / 1e-24 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.008G099600 [exp] 104 / 7e-24 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.008G163300 [exp] 107 / 4e-23 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.003G103200 [exp] 101 / 5e-23 AT3G17380 251 / 2e-82 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0072 [flax] [poplar] Ubiquitin PF12436 [flax] [poplar] USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7
Representative CDS sequence Show only first row Show all	>Lus10043456 pacid=23168374 polypeptide=Lus10043456 locus=Lus10043456.g ID=Lus10043456.BGIv1.0 annot-version=v1.0 ATGAAGTGGTGTGGAAGACTTCGCTCCATGGCTTGCTCAACATTTGCCCCGTGTAAGTTCCCACCGGAATACCCAAATTGTCCCTTCGGTGGCTACACAT ACACTGATCCATCAGTCTCCGCTACAGAGCGCGCTCTTTCTTTTGCTTTCTCGCTCGGTGGTGTCAACTTCGTCTGCTTTTACGTCGATCGGCGGCTGCC TTCCCATCGCCCAACTATGACTCTGATGACACCTCCGCCAATGGATGTAATTCACCTCCACCCCCCGTCAAATTCCTCCATTCTACTCTCTTCTGCCTCG ATAGTCAAAATTCTTACTGCTCTTTGTGTATCCGCTTCAATCTCTCTCCTCTCTCAAGAAGATGACGAGATGCTGGTTCCACAAACTGACTTGGTGGAAG GACCGCAGCCCATGGAAGTCATACCTGCCGAAACAGCTACAACTGAGGCTCAGTCAGTTGATGATCCACCATCGGCGAGGTTTACCTGGACCATTGACAA TTTCTCCAGACTCAACACGAAAAAGTTGTATTCTGATGTCTTTGTTGTTGGAGGTTATAAATGGCGGATTCTTGTTTTTCCCAAGGGTAACAATGTTGAC CATCTATCTATGTACCTAGATGTTGCAGACTCTGCAACTTTACCATATGGCTGGAGCAGATATGCTCAGTTCAGCCTGACCATTGTTAATCAATTACAGC AGAAGTGCTCTATCAGGAAAGAGACGCAACACCAGTTTAATGCTCGTGAGAGTGATTGGGGATTTACTTCATTCATGCTGTTGGGTGAATTATATGATCC TGGTAGAGGTTATCTCGTTAATGATATATGCATAGTAGAGGCAGATGTTGCTGTCCGGAAAATTACAGATTATTGGTCCCATGATTCTAAAAAAGAGACT GGTTATGTTGGGCTTAAAAATCAAGGAGCAACATGCTACATGAACTCTCTTCTTCAGACGCTCTACCATATTCCTTACTTCAGAAAGGCTGTGTATCACA TGCCAACAACTGAGAATGACATGCCATCCGGAAGCATTCCTCTTGCTCTGCAGAGTTTGTTCTATAAACTTCAATACAGCGACACCAGTGTGGCAACAAA AGAGCTGACTAAGTCTTTTGGCTGGGACACTTATGATTCTTTCATGCAGCATGATGTTCAAGAACTTAATAGGGTTCTTAGTGAAAAGCTTGAAGACAAA ATGAAGGGTACTGTTGTGGAGGGAACGATACAACAGTTGTTTGAAGGCCATGCCATGAATTATATAGAATGCATCAATGTGGACTACAAGTCAACCAGAA AGGAATCATTTTATGATCTACAGCTTGATGTTAAAGGTTGTCGAGATGTCTATGCATCTTTTGACAAGTATGTTGAAGTGGAACGTCTTGAAGGGGATAA CAAGTATCACGCTGAACAACATGGGCTTCAGGATGCCAAAAAGGGAGTCCTTTTTATTGACTTCCCCCCTGTTCTTCAACTTCAGTTGAAAAGATTCGAG TATGATTTTATGCGAGATACAATGGTTAAGATAAATGATCGTTACGAATTCCCTCTGCAACTTGATCTTGATATAGAGAACGGAAAATATTTGTCGCCAG CTGCAGATAGAAGCGTCCGCAACCTTTATACCCTCCACAGTGTGTTAGTACATAGTGGCGGTGTGCACGGTGGACACTATTATGCTTATATCAGACCAAC TCTTTCAGATCAATGGTTTAAGTTCGACGATGAGCGGGTAACTAAAGAGGACATGAAAAGAGCATTAGAGGAGCAGTATGGCGGCGAGGAAGAGTTGCCG CAGACAAATCCTGGATTCAACAATTCTCCTTTTAAGTTCACAAAATATTCAAATGCTTATATGCTTGTGTATATACGCGAGTCTGACAAGGAAAAGATAA TCTGTAATGTGGATGAGAAGGACATTGCAGAACATCTGAGGGTAAGGTTGAAGAAAGAACAGGAGGAAAAGGAACAAAAGAGAAAGGAAAAATCCGAGGC CCACTTGTACACTATTATAAAGGTTGCGCGTAGCGAGGATCTTCTTGAACAGATTGGGAAGGATATTTATTTTGATCTTGTGGATCATGACAAAGTTCGC AGTTTTCGCATTCAGAAGCAGACTCCCTTTACCCTTTTCAAGGAAGAAGTTGCAAAAGAGTTTGGTGTACCGATTCAGTTCCAACGTTTCTGGCTATGGG CGAAACGACAGAACCATACATACCGTCCAAACCGGCCATTAACTCCTCAAGAAGAATCACAATCAGTTGGACAGTTGAGAGAAGTATCAAACAAAGCAAA TAATGCGGAGCTAAAGTTGTTGTTAGAAGTGGAACTTGGACCGGATATGCGTCCTACTGCTCCTCCTGAAAGAACCAAGGAGGATATTCTGCTCTTCTTT AAACTATATGACCCAGTGAAAGAAGAACTGAGGTATCTTGGGAGGCTATTTGTAAAGGGTAGTGGTAAGCCAATGGAGATTTTGACGAAGTTAAATGAAA TGGCTGGTTATGCTCCTGACCAAGAGATTGAGCTTTATGAGGAAATAAAGTTTGAACCTCATGTCATGTGTGAACCCATTGACAAGAAGATAGCATTTCG CTCTAGCCAGCTGGAAGATGGAGACATAGTTTGCTTTCAGAAGCCCCCTCCTGCGAGTGGGGAACAATGGCGCTATCCTGATGTGCCTTCTTTTCTTGAA TATGTGCATAATCGACAGGTGGTTCGTTTTCGATCATTAGAGAAACCAAAAGAAGATGAGTTCTCCTTAGAATTGTCAAAGCTTCATACGTACGATGATG TGGTTAAAAGGGTAGCTCATCATCTTGGCTTGGAAGATCCATCCAAAATTAGGCTAACATCTCACAATTGTTACTCCCAGCAACCTAAACCTCAACCAAT AAAGTATAGAGGAGTTGAACATTTGTCTGATATGCTGGTCCATTACAACCAGACATCTGACATTCTATACTATGAAGTGCTTGATATTCCTCTACCAGAG CTTCAAGGTCTGAAAACTTTGAAAGTTGCCTTTCATCATGCCACCAAGGATGAGGTTGTAATTCATACCATTAGATTGCCAAAGCAGAGTACCGTAGGTG ATGTCATAAATGATCTCAAGACTAAGGTTGAGTTGTCTCACCCCAATGCTGAACTTAGACTACTGGAGGTGTTCTATCACAAGATATACAAGATCTTTCC ACCGAATGAGAAGATTGAAAACATTAATGACCAGTACTGGACACTTCGTGCAGAGGAGATCCCAGAAGAGGAGAAACAGATTGGGCCAAACGATCGTTTA ATACATGTTTATCATTTCATGAAGGACACAGCTCAAAACCAGCAAGTTCAAAATTTCGGGGAACCATTTTTCCTCGTAATTCGTGAGGGGGAGACATTGG CTGAAGTGAAAGTTCGTATACAGCAGAAATTGCAGGTTCCTGATGAGGAGTTTTCAAAGTGGAAGTTTGCTTTTCTGTCACTTGGTCGGCCAGAGTATCT TGAAGAAGGTGATGTGGTTTCAAGTCGATTTCAGAGAAGGGACGTGTATGGAGCTTGGGAGCAGTATCTAGGGCTGGAGCATGCAGATAGTGCTCCAAAA CGGTCATATGCAGCTAATCAGAACCGTCACACGTATGAGAAACCAGTGAAAATTTATAACTAG
AA sequence Show only first row Show all	>Lus10043456 pacid=23168374 polypeptide=Lus10043456 locus=Lus10043456.g ID=Lus10043456.BGIv1.0 annot-version=v1.0 MKWCGRLRSMACSTFAPCKFPPEYPNCPFGGYTYTDPSVSATERALSFAFSLGGVNFVCFYVDRRLPSHRPTMTLMTPPPMDVIHLHPPSNSSILLSSAS IVKILTALCVSASISLLSQEDDEMLVPQTDLVEGPQPMEVIPAETATTEAQSVDDPPSARFTWTIDNFSRLNTKKLYSDVFVVGGYKWRILVFPKGNNVD HLSMYLDVADSATLPYGWSRYAQFSLTIVNQLQQKCSIRKETQHQFNARESDWGFTSFMLLGELYDPGRGYLVNDICIVEADVAVRKITDYWSHDSKKET GYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDK MKGTVVEGTIQQLFEGHAMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQHGLQDAKKGVLFIDFPPVLQLQLKRFE YDFMRDTMVKINDRYEFPLQLDLDIENGKYLSPAADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKEDMKRALEEQYGGEEELP QTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIAEHLRVRLKKEQEEKEQKRKEKSEAHLYTIIKVARSEDLLEQIGKDIYFDLVDHDKVR SFRIQKQTPFTLFKEEVAKEFGVPIQFQRFWLWAKRQNHTYRPNRPLTPQEESQSVGQLREVSNKANNAELKLLLEVELGPDMRPTAPPERTKEDILLFF KLYDPVKEELRYLGRLFVKGSGKPMEILTKLNEMAGYAPDQEIELYEEIKFEPHVMCEPIDKKIAFRSSQLEDGDIVCFQKPPPASGEQWRYPDVPSFLE YVHNRQVVRFRSLEKPKEDEFSLELSKLHTYDDVVKRVAHHLGLEDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPE LQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVINDLKTKVELSHPNAELRLLEVFYHKIYKIFPPNEKIENINDQYWTLRAEEIPEEEKQIGPNDRL IHVYHFMKDTAQNQQVQNFGEPFFLVIREGETLAEVKVRIQQKLQVPDEEFSKWKFAFLSLGRPEYLEEGDVVSSRFQRRDVYGAWEQYLGLEHADSAPK RSYAANQNRHTYEKPVKIYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	1.4	0.9384
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	2.2	0.9288
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	2.4	0.9347
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	2.4	0.9228
AT5G22450			unknown protein		Lus10004878 [exp]	3.6	0.9078
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	3.9	0.9329
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	4.0	0.9295
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	5.3	0.9069
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	5.9	0.9182
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	6.0	0.9151

Compare expression of checked genes

Lus10043456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.