Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 781 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 780 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 740 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 660 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 645 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 634 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 627 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 617 / 0 Glycosyl hydrolase family protein (.1.2) AT5G64570 135 / 5e-33 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G10560 134 / 2e-32 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013646 [exp] 816 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 802 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 798 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013390 [exp] 779 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 778 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 768 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 766 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 754 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008434 [exp] 716 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013700 [exp] 852 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 830 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 822 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 815 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 801 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 652 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 321 / 9e-106 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 259 / 8e-83 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 225 / 8e-70 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 202 / 2e-60 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043457 pacid=23168445 polypeptide=Lus10043457 locus=Lus10043457.g ID=Lus10043457.BGIv1.0 annot-version=v1.0 ATGCATACATACCCTTTCTTTCTAGGATCCTGCCAAAACAGTAGTCGGTTAAACGTTGAGATCTGCAGAACACTAGAGACGGTGAAGGCTTTGGCAGTTG GCATCTCCGTTGTCTTCCTCTTGTGTTGGTTGACATGTGAGGCTGGGCGCAAGGTTACCAAGGCGGTCGATGTTAATGTGAAATACAAAGATCCAAATGT GCCCGTTGAAGACAGAATCACTGATCTGTTGAGTCGCATGACTCTTCAAGAGAAGATTGGTCAAATGACGCAGATTGAGGTACCAGTTGCCACCGCTGAG ATCATGGACAAGTACTTCATTGGGAGCTTGTTGACTGGCGGAGGGACTCAGCCGGATGAAAATGCATCTCCAAAGTACTGGGTGGACATGATGAATATGT TCCAGAAAGGATCTATGAAGACTCGTCTGGCAATACCGATGATTTACGGGATTGATGCGGTTCATGGTCACAACAATGTTGTCAATGCCACCATTTTCCC TCATAATATCAACCTTGGAGTTACCAGGGATCCTGGCCTTGTCAAGAAGATTGGTGGAGCAACTGCCCTTGAAGTTAGAGCTACAGGAATCCCCTATGCT TTCGCTCCATGTATCGCCGTTTGTAGAGATCCGAGATGGGGGAGATGTTACGAGAGCTACAGTGAAGACCACAAGATCGTCGAAGAGATGACCGACTTTG TTAATGGCTTGCAAGGTGACCTCCCACCCAATTATCCAAGGGATTATCCATATATTCAAGGAAAGGATAAAGTGGCTGGCTGTGCCAAGCATTATATTGG TGATGGAGGAACAGTCAAGGGAATCAATGAAAACAACACCATCATTGATGTGAAAGGTTTAATGTCCATGTTCATGCCGGCTTATGATCTAGCAATACAG AAAGGAATCGCTTCTGTTATGATATCATTTTCAAGCATTAATGGCGTCAGGATGCACGCCAATGCAGACTTGATTAGCCATCTCAAGAAAAAGTTCAAGG GCTTCGTCATCTCCGACTGGCAAGCAATTGACAAGATCACCGACCCACCTGGTTCCAATTACACATACTCCGTCCAGGCCTCCATTTTAGCTGGGCTTGA CATGATCATGGTTCCTGACGACTATACATCATTCATTGGAAACCTGACACAATTGGTAAATGACAAAGTCATACCAATGAGCCGAATTGATGATGCTGTT ACCAGAATCCTGAGGGTCAAATTCTTGGTAGGCCTCTTTGAGAACCCATTTCCAGACTACACTATGGCGGATATGCTTGGGAAACAGGAGCACAGGGAGC TGGCAAGAGAAGCTGTGAGGAAATCTCTCGTGCTGTTGAAAAACGGCAAGACAGAGGACAAACCCATGTTACCTCTACCTAAGAAGGCCAAAAAGATCCT CGTTGTTGGTTCCCACGCCGACAATTTGGGCTATCAATGCGGCGGGTGGACCGTTGAATGGCAGGGATACTCTGGCAAGGACAGGACTGCAGGAACCACC ATTCTTGCAGGGATCAAGAAGACGGTGGATCCAACCACAGAGGTGATGTTCGACGAGTCTGCCGACCCTGCATTCTTGAAGGCCAATAAAGATGCAGACT TTGCCATAGTGGTGGTGGGGGAAAAGCCATATGCAGAGACGAAAGGCGACAACTTGAACCTGACGATCCCTCAACCGGGTCAGGAGGTTATTAAAAAGGC ATGCAGCAGTGGCGTCAAATGCGTAGTGATCCTGATATCAGGGAGGCCATTGGTGATAGAGCAGTTCCTTCCGGTGATGGATGCTCTGGTGGCTGCATTC TTGCCCGGTTCGGAAGGCCAAGGAGTGGCTGATTTGTTGTTTGGGGATTATGGTTTCACAGGGAAGTTGGCCAGGACTTGGATGAAGAGAGTCGATCAGC TTCCCATGAACTTTGGAGACAAGGACTATGATCCTTTGTTTCCGTTTGGGTTTGGGCTTGAAACCAACAAGGGAGGGTGA
AA sequence Show only first row Show all	>Lus10043457 pacid=23168445 polypeptide=Lus10043457 locus=Lus10043457.g ID=Lus10043457.BGIv1.0 annot-version=v1.0 MHTYPFFLGSCQNSSRLNVEICRTLETVKALAVGISVVFLLCWLTCEAGRKVTKAVDVNVKYKDPNVPVEDRITDLLSRMTLQEKIGQMTQIEVPVATAE IMDKYFIGSLLTGGGTQPDENASPKYWVDMMNMFQKGSMKTRLAIPMIYGIDAVHGHNNVVNATIFPHNINLGVTRDPGLVKKIGGATALEVRATGIPYA FAPCIAVCRDPRWGRCYESYSEDHKIVEEMTDFVNGLQGDLPPNYPRDYPYIQGKDKVAGCAKHYIGDGGTVKGINENNTIIDVKGLMSMFMPAYDLAIQ KGIASVMISFSSINGVRMHANADLISHLKKKFKGFVISDWQAIDKITDPPGSNYTYSVQASILAGLDMIMVPDDYTSFIGNLTQLVNDKVIPMSRIDDAV TRILRVKFLVGLFENPFPDYTMADMLGKQEHRELAREAVRKSLVLLKNGKTEDKPMLPLPKKAKKILVVGSHADNLGYQCGGWTVEWQGYSGKDRTAGTT ILAGIKKTVDPTTEVMFDESADPAFLKANKDADFAIVVVGEKPYAETKGDNLNLTIPQPGQEVIKKACSSGVKCVVILISGRPLVIEQFLPVMDALVAAF LPGSEGQGVADLLFGDYGFTGKLARTWMKRVDQLPMNFGDKDYDPLFPFGFGLETNKGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	1.0	0.9925
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	2.0	0.9897
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	2.4	0.9852
AT2G32970			unknown protein		Lus10030016 [exp]	3.9	0.9782
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	4.5	0.9790
					Lus10024349 [exp]	4.9	0.9778
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	5.2	0.9732
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	5.5	0.9702
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	7.0	0.9754
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	7.1	0.9668

Compare expression of checked genes

Lus10043457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.